NCI's Containers and Workflows Interest Group Webinar Series

Mon, 05 Apr 2021 12:49:36 -0700 

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ORGANIZER;CN="Addepalli, Kanakadurga (NIH/NCI) [E]":mailto:kanakadurga.addepa
 [email protected]
ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=List NCI-
 CONTAINERS-WORKFLOWS-WG:mailto:[email protected]
ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=List BIOI
 NFORMATICS-SIG-L:mailto:[email protected]
ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=List BIOI
 NFO-GENERAL-NCI:mailto:[email protected]
ATTENDEE;ROLE=REQ-PARTICIPANT;PARTSTAT=NEEDS-ACTION;RSVP=FALSE;CN=List BIOI
 NFORMATICS:mailto:[email protected]
DESCRIPTION;LANGUAGE=en-US:Please join us for a\n                       NCI
  Containers and Workflows Interest Group Seminar\n\nIntroduction to cancer
  data analysis on the ISB-Cancer Gateway in the Cloud\n\nBy\nDr. Fabian Se
 idl\nBioinformatics Scientist\, ISB-CGC\n\nFriday\, April 9th\, 2021\n3:00
  PM – 4:00 PM EDT\n\nAbstract\nThe ISB Cancer Gateway in the Cloud (ISB-
 CGC) is one of the three Cloud Resources\, part of the NCI’s Cancer Rese
 arch Data Commons ecosystem serving to democratize access to large cancer 
 datasets as well as high-performance compute resources on the Google Cloud
  Platform. ISB-CGC offers multiple avenues for accessing and analyzing lar
 ge-scale cancer datasets including TCGA\, TARGET\, CPTAC and other importa
 nt references such as GENCODE and COSMIC.  ISB-CGC users can analyze petab
 ytes of data using complex workflows written in the language of their choi
 ce (including but not limited to CWL\, WDL\, Snakemake\, Nextflow\, etc.) 
 They can develop new analysis pipelines using SQL\, Python\, and R\, mine 
 data such as gene expression\, protein abundance\, and somatic mutations i
 n easily accessible and query-able tables of large-scale cancer data and u
 se interactive web tools designed for cohort creation and data discovery a
 nd exploration. Here we will demonstrate how the flexible computing infras
 tructure of ISB-CGC enables researchers to analyze cloud hosted data with 
 their own tools as well as with a collection of powerful Google Cloud Plat
 form native tools and technologies (including Google BigQuery for big data
  analysis and Google Compute Engine for complex workflow execution).\n\nAb
 stracts\, Slides and Recordings from past CWIG meetings can be found here:
  https://ncihub.org/groups/cwig\nFor questions and subscription\, please c
 ontact\, Durga Addepalli<mailto:[email protected]> or Digant S
 hah<http://[email protected]>\n\n\nJOIN WEBEX MEETING\nhttps://cbiit.web
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 /Canada)\n\nJOIN BY PHONE\n1-650-479-3207 Call-in toll number (US/Canada)\
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 t Skype for Business\nDial sip:[email protected]<mailto:1804
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RECURRENCE-ID;TZID=Eastern Standard Time:20210409T150000
SUMMARY;LANGUAGE=en-US:NCI's Containers and Workflows Interest Group Webina
 r Series
DTSTART;TZID=Eastern Standard Time:20210409T150000
DTEND;TZID=Eastern Standard Time:20210409T160000
CLASS:PUBLIC
PRIORITY:5
DTSTAMP:20210405T193925Z
TRANSP:OPAQUE
STATUS:CONFIRMED
SEQUENCE:8
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