Re: [Biojava-l] Parsing circular sequences

[Matthew Pocock]

I've modified the tag-value embl parser under demos/tagvalue/EmblParser to tokenize the whole of the document including the feature table and the feature properties. Take it for a spin. It's running at a reasonable speed for me (tested on some of the hum*.dat files from embl). To make this usefull we need to add the layer of listeners that build objects from the events.

Matthew

Keith James wrote:

I started on a hybrid EMBL parser which combined tag-value and
JFlex/CUP for the feature table, but gave it up for more interesting
things. (It was a real drag trying to get conflicts in the feature
table BNF to resolve and then there's the syntax errors in the DB
itself.)

I'd help with this. I'm messing with the same thing in Lisp, so it
would be an interesting excercise. (Dammit! I *swore* I'd never do
another EMBL parser!)

Keith

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