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• 2009/11/16 Re: [Biojava-l] Newick parser Richard Holland
• 2009/11/16 Re: [Biojava-l] Newick parser Tiago Antão
• 2009/11/16 Re: [Biojava-l] Newick parser Richard Holland
• 2009/11/15 Re: [Biojava-l] JMol I/O Andreas Prlic
• 2009/11/15 [Biojava-l] Newick parser Tiago Antão
• 2009/11/15 [Biojava-l] JMol I/O Andy Lu
• 2009/11/13 Re: [Biojava-l] How do I read a FASTA file containing protein sequences in lowercase? Richard Holland
• 2009/11/13 Re: [Biojava-l] Newick/Nexus processing of non-binary trees Tiago Antão
• 2009/11/13 Re: [Biojava-l] Newick/Nexus processing of non-binary trees Thasso Griebel
• 2009/11/13 Re: [Biojava-l] Newick/Nexus processing of non-binary trees Richard Holland
• 2009/11/13 Re: [Biojava-l] Newick/Nexus processing of non-binary trees Tiago Antão
• 2009/11/13 Re: [Biojava-l] SeqIOTools deprecated, looking for alternatives // RichSeq.IOTools Richard Holland
• 2009/11/12 [Biojava-l] SeqIOTools deprecated, looking for alternatives // RichSeq.IOTools Oliver Stolpe
• 2009/11/10 Re: [Biojava-l] Java Error:- XML Parsing Error: XML or text declaration not at start of entity jitesh dundas
• 2009/11/07 Re: [Biojava-l] Bio Java installation inquiry Andreas Prlic
• 2009/11/07 [Biojava-l] Check out my photos on Facebook Hemant Katta
• 2009/11/07 Re: [Biojava-l] Bio Java installation inquiry andy law (RI)
• 2009/11/07 Re: [Biojava-l] Bio Java installation inquiry Andreas Prlic
• 2009/11/07 Re: [Biojava-l] Bio Java installation inquiry Andreas Prlic
• 2009/11/07 [Biojava-l] Bio Java installation inquiry Andy Lu
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Andreas Prlic
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/04 Re: [Biojava-l] Rooted trees in nexus files Thasso Griebel
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Peter Midford
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Thasso Griebel
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Hilmar Lapp
• 2009/11/03 Re: [Biojava-l] NCBI xml parser Andreas Prlic
• 2009/11/03 Re: [Biojava-l] NCBI xml parser Pierre-Yves
• 2009/11/03 Re: [Biojava-l] NCBI xml parser Andreas Prlic
• 2009/11/03 Re: [Biojava-l] NCBI xml parser Pierre-Yves
• 2009/11/03 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/02 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/02 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/02 Re: [Biojava-l] NCBI xml parser Pierre-Yves
• 2009/11/02 Re: [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/11/02 Re: [Biojava-l] NCBI xml parser Andreas Prlic
• 2009/11/02 Re: [Biojava-l] Rooted trees in nexus files Richard Holland
• 2009/11/02 Re: [Biojava-l] NCBI xml parser Pierre-Yves
• 2009/11/02 Re: [Biojava-l] NCBI xml parser Josh Goodman
• 2009/11/02 [Biojava-l] NCBI xml parser Pierre-Yves
• 2009/11/02 Re: [Biojava-l] Java Error:- XML Parsing Error: XML or text declaration not at start of entity jitesh dundas
• 2009/11/01 Re: [Biojava-l] Java Error:- XML Parsing Error: XML or text declaration not at start of entity Andreas Prlic
• 2009/11/01 [Biojava-l] Java Error:- XML Parsing Error: XML or text declaration not at start of entity jitesh dundas
• 2009/10/30 Re: [Biojava-l] Newick Tree Visualization Tiago Antão
• 2009/10/30 Re: [Biojava-l] Newick Tree Visualization Marc Colosimo
• 2009/10/30 [Biojava-l] Rooted trees in nexus files Tiago Antão
• 2009/10/30 [Biojava-l] \biojava-1.7-all\biojava-1.7\demos\seqviewer\EmblViewer.java - Doesn't Work Mara Axiom
• 2009/10/30 Re: [Biojava-l] Newick Tree Visualization Hilmar Lapp
• 2009/10/30 [Biojava-l] Newick Tree Visualization Mara Axiom
• 2009/10/21 [Biojava-l] Hackathon Richard Holland
• 2009/10/15 Re: [Biojava-l] BioJava and Maven Mark Fortner
• 2009/10/13 Re: [Biojava-l] BioJava and Maven Michael Heuer
• 2009/10/12 [Biojava-l] BioJava and Maven Mark Fortner
• 2009/10/07 Re: [Biojava-l] Structure alignment parameters questions Shane Sturrock
• 2009/10/07 Re: [Biojava-l] Structure alignment parameters questions Andreas Prlic
• 2009/10/07 Re: [Biojava-l] Structure alignment parameters questions Shane Sturrock
• 2009/10/07 Re: [Biojava-l] Structure alignment parameters questions Andreas Prlic
• 2009/10/06 Re: [Biojava-l] Structure alignment parameters questions Shane Sturrock
• 2009/10/05 Re: [Biojava-l] Structure alignment parameters questions Andreas Prlic
• 2009/10/05 Re: [Biojava-l] Graphical libraries Pierre-Yves
• 2009/10/05 Re: [Biojava-l] Graphical libraries Pierre-Yves
• 2009/10/05 Re: [Biojava-l] Graphical libraries Andy Law (RI)
• 2009/10/05 Re: [Biojava-l] Graphical libraries Andy Yates
• 2009/10/04 [Biojava-l] Structure alignment parameters questions Shane Sturrock
• 2009/10/04 Re: [Biojava-l] Graphical libraries Richard Holland
• 2009/10/02 [Biojava-l] [ANN]VTD-XML 2.7 jimmy Zhang
• 2009/10/02 Re: [Biojava-l] For BioJava List: Possible solution to Hibernate and slow Atom storage. Andreas Prlic
• 2009/10/02 [Biojava-l] Graphical libraries Pierre-Yves
• 2009/10/02 [Biojava-l] please don't send attachments to the biojava-lists Andreas Prlic
• 2009/10/02 Re: [Biojava-l] ParseException when using interleaved Nexus file David Johnson
• 2009/10/02 Re: [Biojava-l] Upper case symbols Eric Haugen
• 2009/10/02 [Biojava-l] Out of heap space during structure parsing. Paul B
• 2009/10/02 Re: [Biojava-l] FASTA parsing bug ? Josh Goodman
• 2009/10/02 Re: [Biojava-l] FASTA parsing bug ? Josh Goodman
• 2009/09/30 Re: [Biojava-l] [Biojava-dev] what is the default parameters of Andreas Prlic
• 2009/09/23 Re: [Biojava-l] ParseException when using interleaved Nexus file David Johnson
• 2009/09/19 [Biojava-l] Fwd: [Wg-phyloinformatics] bioinform article "Biomanycores" Mark Schreiber
• 2009/09/14 Re: [Biojava-l] Snow Leopard Check Out Problems Daniel D Ence
• 2009/09/14 Re: [Biojava-l] Snow Leopard Check Out Problems Andreas Prlic
• 2009/09/14 [Biojava-l] Snow Leopard Check Out Problems Daniel D Ence
• 2009/09/14 Re: [Biojava-l] [Biojava-dev] BioJava Hackathon in January Andreas Prlic
• 2009/09/14 [Biojava-l] BioJava Hackathon in January Richard Holland
• 2009/08/28 Re: [Biojava-l] [Biojava-dev] BioJava code freeze, modularization and action items for sub modules Andreas Prlic
• 2009/08/27 Re: [Biojava-l] [Biojava-dev] BioJava code freeze, modularization and action items for sub modules Mark Schreiber
• 2009/08/27 Re: [Biojava-l] [Biojava-dev] BioJava code freeze, modularization and action items for sub modules Andreas Prlic
• 2009/08/27 Re: [Biojava-l] [Biojava-dev] BioJava code freeze, modularization and action items for sub modules Michael Heuer
• 2009/08/24 Re: [Biojava-l] [Biojava-dev] Adding profile-profile alignment algorithms to Biojava Richard Holland
• 2009/08/24 [Biojava-l] Koen Bruynseels is out of the office. koen . bruynseels
• 2009/08/23 Re: [Biojava-l] How STRAP can contribute to BJ3 Andreas Prlic
• 2009/08/23 [Biojava-l] BioJava code freeze, modularization and action items for sub modules Andreas Prlic
• 2009/08/23 [Biojava-l] How STRAP can contribute to BJ3 Dr. Christoph Gille
• 2009/08/19 Re: [Biojava-l] BioJava PDB question Andreas Prlic
• 2009/08/16 [Biojava-l] plans for next months Andreas Prlic
• 2009/08/16 Re: [Biojava-l] Where notes are coming from? Richard Holland
• 2009/08/16 [Biojava-l] Where notes are coming from? George Waldon
• 2009/08/11 Re: [Biojava-l] BioJava, Dazzle and Google App Engine (Java version) Andreas Prlic
• 2009/08/11 Re: [Biojava-l] ParseException when using interleaved Nexus file Richard Holland
• 2009/08/11 Re: [Biojava-l] ParseException when using interleaved Nexus file David Johnson
• 2009/08/11 Re: [Biojava-l] ParseException when using interleaved Nexus file Richard Holland
• 2009/08/11 Re: [Biojava-l] BioJava, Dazzle and Google App Engine (Java version) Rouilly, Vincent
• 2009/08/09 Re: [Biojava-l] BioJava, Dazzle and Google App Engine (Java version) Rouilly, Vincent
• 2009/08/08 [Biojava-l] BioJava, Bioperl and R rabee.a.aa
• 2009/08/08 [Biojava-l] Fwd: BioJava, Dazzle and Google App Engine (Java version) Andreas Prlic
• 2009/08/08 Re: [Biojava-l] BioJava, Dazzle and Google App Engine (Java version) Richard Holland
• 2009/08/08 [Biojava-l] BioJava, Dazzle and Google App Engine (Java version) Rouilly, Vincent
• 2009/08/07 Re: [Biojava-l] ParseException when using interleaved Nexus file David Johnson
• 2009/08/07 Re: [Biojava-l] ParseException when using interleaved Nexus file Richard Holland
• 2009/08/07 Re: [Biojava-l] ParseException when using interleaved Nexus file Richard Holland
• 2009/08/06 Re: [Biojava-l] blast parsing question Andreas Prlic
• 2009/08/06 Re: [Biojava-l] Upper case symbols Andreas Dräger
• 2009/08/06 [Biojava-l] ParseException when using interleaved Nexus file David Johnson
• 2009/08/05 [Biojava-l] chromatogram question: get confident value of the called base Thien Nguyen
• 2009/08/05 [Biojava-l] Upper case symbols Andreas Draeger
• 2009/08/05 [Biojava-l] visualization nathan genome
• 2009/08/05 [Biojava-l] (no subject) nathan genome
• 2009/08/04 Re: [Biojava-l] Sequence logo mark . schreiber
• 2009/08/04 [Biojava-l] Sequence logo Andreas Draeger
• 2009/08/04 Re: [Biojava-l] SimpleGappedSequence using RichSequence objects Richard Holland
• 2009/08/04 [Biojava-l] SimpleGappedSequence using RichSequence objects Frederik Decouttere
• 2009/07/29 Re: [Biojava-l] FASTQ in BioJava, BioRuby (and Biopython, BioPerl & EMBOSS) Andreas Prlic
• 2009/07/29 [Biojava-l] blast parsing question Bernd Jagla
• 2009/07/28 Re: [Biojava-l] How to parse large Genbank files? Andreas Prlic
• 2009/07/28 Re: [Biojava-l] How to parse large Genbank files? Richard Holland
• 2009/07/28 Re: [Biojava-l] How to parse large Genbank files? Florian Mittag
• 2009/07/27 [Biojava-l] Issues with taxon table not having taxon_id and ncbi_id equal under biosql schema Deepak sheoran
• 2009/07/27 Re: [Biojava-l] How to parse large Genbank files? Mark Schreiber
• 2009/07/27 Re: [Biojava-l] How to parse large Genbank files? Florian Mittag
• 2009/07/26 Re: [Biojava-l] Retrieving AUTHOR information from PDB file Andreas Prlic
• 2009/07/24 Re: [Biojava-l] How to parse large Genbank files? Mark Schreiber
• 2009/07/24 [Biojava-l] How to parse large Genbank files? Florian Mittag
• 2009/07/24 Re: [Biojava-l] Load Genbank files takes ages Florian Mittag
• 2009/07/24 [Biojava-l] Koen Bruynseels is out of the office. koen . bruynseels
• 2009/07/24 Re: [Biojava-l] Ontology OBO is_a TERMs Florian Mittag
• 2009/07/23 Re: [Biojava-l] Ontology OBO is_a TERMs Andreas Prlic
• 2009/07/23 Re: [Biojava-l] Ontology OBO is_a TERMs Peter Midford
• 2009/07/23 Re: [Biojava-l] Ontology OBO is_a TERMs JP
• 2009/07/23 Re: [Biojava-l] Ontology OBO is_a TERMs Peter Midford
• 2009/07/23 [Biojava-l] Ontology OBO is_a TERMs JP
• 2009/07/22 Re: [Biojava-l] Compile error: unmappable character for encoding UTF-8 Andreas Dräger
• 2009/07/22 Re: [Biojava-l] Pairwise alignment of protein sequences Andreas Dräger
• 2009/07/22 Re: [Biojava-l] Compile error: unmappable character for encoding UTF-8 Richard Holland
• 2009/07/22 Re: [Biojava-l] Compile error: unmappable character for encoding UTF-8 Andreas Prlic
• 2009/07/22 Re: [Biojava-l] Request For Feature: let SimpleNamespace or Namespace be Serializable Richard Holland
• 2009/07/22 Re: [Biojava-l] Request For Feature: let SimpleNamespace or Namespace be Serializable pprun
• 2009/07/22 Re: [Biojava-l] Pairwise alignment of protein sequences pprun
• 2009/07/22 Re: [Biojava-l] Request For Feature: let SimpleNamespace or Namespace be Serializable Richard Holland
• 2009/07/22 Re: [Biojava-l] Pairwise alignment of protein sequences Andreas Prlic
• 2009/07/22 [Biojava-l] Compile error: unmappable character for encoding UTF-8 pprun
• 2009/07/22 Re: [Biojava-l] Pairwise alignment of protein sequences pprun
• 2009/07/22 [Biojava-l] Request For Feature: let SimpleNamespace or Namespace be Serializable pprun
• 2009/07/21 Re: [Biojava-l] How to parse pairwise alignment result string Andreas Draeger
• 2009/07/20 Re: [Biojava-l] feature request Sequence Alignment Andreas Draeger
• 2009/07/20 [Biojava-l] feature request Sequence Alignment Andreas Prlic
• 2009/07/20 Re: [Biojava-l] Pairwise alignment of protein sequences Andreas Prlic
• 2009/07/19 Re: [Biojava-l] Can I get the additional information, such as chromosome number from "source" feature from genbank file? pprun
• 2009/07/19 Re: [Biojava-l] Can I get the additional information, such as chromosome number from "source" feature from genbank file? Richard Holland
• 2009/07/18 [Biojava-l] Can I get the additional information, such as chromosome number from "source" feature from genbank file? pprun
• 2009/07/18 [Biojava-l] Koen Bruynseels is out of the office. koen . bruynseels
• 2009/07/18 Re: [Biojava-l] Load Genbank files takes ages Ola Spjuth
• 2009/07/17 Re: [Biojava-l] Load Genbank files takes ages Florian Mittag
• 2009/07/16 Re: [Biojava-l] Load Genbank files takes ages Mark Schreiber
• 2009/07/16 [Biojava-l] Load Genbank files takes ages Florian Mittag
• 2009/07/16 [Biojava-l] visualizing pair alignment to a genome nathan genome
• 2009/07/09 Re: [Biojava-l] Retrieving AUTHOR information from PDB file Andreas Prlic
• 2009/07/09 [Biojava-l] How to parse pairwise alignment result string David Zhao
• 2009/07/09 Re: [Biojava-l] Pairwise alignment of protein sequences David Zhao
• 2009/07/09 [Biojava-l] Pairwise alignment of protein sequences David Zhao
• 2009/07/09 [Biojava-l] Assembly data reading Paolo Pavan
• 2009/07/09 Re: [Biojava-l] Retrieving AUTHOR information from PDB file Andrew Clegg
• 2009/07/09 Re: [Biojava-l] Retrieving AUTHOR information from PDB file Andrew Clegg
• 2009/07/08 Re: [Biojava-l] Retrieving AUTHOR information from PDB file Andreas Prlic
• 2009/07/08 [Biojava-l] Retrieving AUTHOR information from PDB file Andrew Clegg
• 2009/07/07 [Biojava-l] summary biojava user meeting Andreas Prlic
• 2009/06/25 [Biojava-l] Visit my Netlog profile Saulo
• 2009/06/24 [Biojava-l] BOSC presentation Andreas Prlic
• 2009/06/24 Re: [Biojava-l] : prob in reading sequence Richard Holland
• 2009/06/24 [Biojava-l] : prob in reading sequence ranjith kurungadam
• 2009/06/22 Re: [Biojava-l] Simple Question - Creating a Java object Colosimo, Marc E.
• 2009/06/20 [Biojava-l] BioJava user meeting at ISMB/BOSC Andreas Prlic
• 2009/06/19 Re: [Biojava-l] Simple Question - Creating a Java object (some form of Tree) from a Newick format file Richard Holland
• 2009/06/19 [Biojava-l] Simple Question - Creating a Java object (some form of Tree) from a Newick format file JP
• 2009/06/19 Re: [Biojava-l] SCF Parser issues with gaps and unread peak values ? Andy Yates
• 2009/06/19 Re: [Biojava-l] Need help for resolving the issue args[0] mark . schreiber
• 2009/06/18 [Biojava-l] Need help for resolving the issue args[0] Abdul Qaddus
• 2009/06/18 Re: [Biojava-l] SCF Parser issues with gaps and unread peak values ? Ashika Umanga Umagiliya
• 2009/06/17 [Biojava-l] SCF Parser issues with gaps and unread peak values ? Ashika Umanga Umagiliya
• 2009/06/17 Re: [Biojava-l] Aligning Chromatogram with Phrap ACE sequences ? Andreas Prlic
• 2009/06/17 Re: [Biojava-l] Aligning Chromatogram with Phrap ACE sequences ? Ashika Umanga Umagiliya
• 2009/06/17 Re: [Biojava-l] Aligning Chromatogram with Phrap ACE sequences ? Andy Yates

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