Hi all - I noticed that someone has posted a tutorial to the wiki page (http://biojava.org/wiki/BioJava:Tutorial:MultiAlignClustalW) showing how to launch ClustalW from biojava which is very much appreciated. The tutorial makes use of the standard Java Runtime and Process classes. Developers may also be interested in the ExecRunner class that is in the utils package of biojava1.4.
There is also an entire API for handelling external processes in the CVS version of biojava (org.biojava.utils.process) which makes handling of external processes much simpler. - Mark Mark Schreiber Research Investigator (Bioinformatics) Novartis Institute for Tropical Diseases (NITD) 10 Biopolis Road #05-01 Chromos Singapore 138670 www.nitd.novartis.com phone +65 6722 2973 fax +65 6722 2910 _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
