Is it possible to send the snippit of code that you're running at all? Andy
On Fri, 1 Sep 2006, K.R. Carter wrote: > Thanks Andy, > > I programmatically set the proxy however, it still does not solve the > problem. > > On 8/31/06, Andy Yates <[EMAIL PROTECTED]> wrote: >> >> That sounds like http proxy problems in my book. >> >> Try looking at this page: http://mindprod.com/jgloss/proxy.html >> >> The main thing to take home is try setting the system properties: >> >> proxySet=true >> http.proxyHost=proxyHostName >> http.proxyPort=proxyHostPort >> >> You can do this programatically using the System.setProperty() method or >> with -DpropertyName=propertyValue from the command line. >> >> Hope that helps, >> >> Andy Yates >> >> [EMAIL PROTECTED] wrote: >> > Hi - >> > >> > This sounds very strange. Is there any stack trace? Could you possibly >> > post the code that recreates the problem? >> > >> > - Mark >> > >> > >> > >> > >> > >> > "K.R. Carter" <[EMAIL PROTECTED]> >> > Sent by: [EMAIL PROTECTED] >> > 08/31/2006 04:34 AM >> > Please respond to kikia.reneese >> > >> > >> > To: [email protected] >> > cc: (bcc: Mark Schreiber/GP/Novartis) >> > Subject: [Biojava-l] SCF file wont load from URL >> > >> > >> > Hello, >> > >> > I am trying to load an scf file by using the input stream from a url and >> > it >> > will not load. Does anyone know what might be happening? My program >> doesnt >> > give an error, it just completely freezes. I am using the latest ( i >> > think) >> > version of SCF class. >> > >> > >> > /** >> > * A [EMAIL PROTECTED] org.biojava.bio.chromatogram.Chromatogram} as >> > loaded from an >> > * SCF v2 or v3 file. Also loads and exposes the SCF format's "private >> > data" >> > * and "comments" sections. The quality values from the SCF are stored >> as >> > * additional sequences on the base call alignment. The labels are the >> > * <code>PROB_</code>* constants in this class. >> > * The values are [EMAIL PROTECTED] >> > org.biojava.bio.symbol.IntegerAlphabet.IntegerSymbol} >> > * objects in the range 0 to 255. >> > * >> > * >> > * @author Rhett Sutphin (<a href="http://genome.uiowa.edu/";>UI >> CBCB</a>) >> > */ >> > >> > any help would be greatly appreciated. >> > >> > Thanks! >> > _______________________________________________ >> > Biojava-l mailing list - [email protected] >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >> > >> > >> > >> > _______________________________________________ >> > Biojava-l mailing list - [email protected] >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >> > >> > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
