Hi guys,
Sorry if this mail has been posted twice..
I have a question with blastall. I use blast-2.2.18 on debian linux.
I execute 'blastall' from my java application.I use m -7 parameter to
get the result as an XML file.
When my input file has more than one sequences like ,
>id 1
ytfgqgtk
>id 2
leikrkr
my output xml file actually contains two separate XML files appended
together , like :
<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN"
"NCBI_BlastOutput.dtd">
<BlastOutput>
..
..
</BlastOutput>
<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN"
"NCBI_BlastOutput.dtd">
<BlastOutput>
..
..
</BlastOutput>
How can i get my results in one XML file,so that i can process it easily?
Thanks in advance,
umanga
_______________________________________________
Biojava-l mailing list - Biojava-l@lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biojava-l
