As I said, I am using the code from http://biojava.org/wiki/BioJava:CookBook:Blast:Parser. I have a normal text file that was created by blast. I thought that the given code converts the input stream from the file into SAX events. Do I have to do another step, before I use the code of that example?
Cheers, Marcel Mark Schreiber wrote: > Is this XML parsing or blast text output? > > - Mark > > On Sat, Jan 24, 2009 at 12:17 AM, Charles Imbusch <char...@imbusch.net > <mailto:char...@imbusch.net>> wrote: > > Hello Marcel, > > I also do experience the problem that the parser is skipping > the even result numbers. I have not found a sufficient solution > for that, so I gave up on parsing on a blast result file containing > multiple results. Instead I splitted up the big fasta file into > serveral ones, so that I just get one result for one fasta file. > That works, even it's not the best solution for it. > > Let me know if you find another solution for that problem. > > Cheers, > Charles > > > _______________________________________________ > Biojava-l mailing list - Biojava-l@lists.open-bio.org > <mailto:Biojava-l@lists.open-bio.org> > http://lists.open-bio.org/mailman/listinfo/biojava-l > > _______________________________________________ Biojava-l mailing list - Biojava-l@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l