Hi Katerina,
First, I want to ask if there is any problem with my code because I get the this error when I build it:cannot access org.biojava.bio.alignment.SimpleAlignment class file for org.biojava.bio.alignment.SimpleAlignment not found System.out.println("Align Results: "+aligner.getPercentIdentitySubject()); It seems to me that the problem is in the class AlignmentPair. I have also downloaded all the source files from SVN and noticed that the class AlignmentPair is supposed to extend the class SimpleAlignment which doesn't exist in the alignment module from SVN. Is this actually where the problem lies or am I doing something wrong?
Your code example looks perfect to me! Actually, I don't think that your version of the class AlignmentPair is broken. It seems to me that you require additional parts of BioJava. The class SimpleAlignment is missing. Did you check the content of the jar file you downloaded? I bet this class is not in there.
Cheers Andreas -- Dipl.-Bioinform. Andreas Dräger Eberhard Karls University Tübingen Center for Bioinformatics (ZBIT) Sand 1 72076 Tübingen Germany Phone: +49-7071-29-70436 Fax: +49-7071-29-5091 _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
