Your classpath is missing bytecode.jar. It's available in the same location as the main biojava jars.
cheers, Richard On 23 Sep 2010, at 15:40, Bernd Jagla wrote: > Hello again,... > > I am still struggling with my little problem. I am getting closer I think... > I made some minor modifications to some biojava files and would like to > compile it under 1.6. Is this possible? > > When I compare version 1.7.1 with mine the only difference seems to be the > java version. And the sample code runs with your but not with mine... ;( > > I get the following error message: > > Exception in thread "main" java.lang.NoClassDefFoundError: > org/biojava/utils/bytecode/CodeException > at > org.biojava.bio.seq.FeatureFilter$OnlyChildren.<clinit>(FeatureFilter.java:1273) > at org.biojava.bio.seq.FeatureFilter.<clinit>(FeatureFilter.java:1817) > at > org.biojava.bio.seq.SimpleFeatureHolder.<init>(SimpleFeatureHolder.java:54) > at > org.biojavax.bio.seq.RichFeature$Tools.makeEmptyFeature(RichFeature.java:167) > at > org.biojavax.bio.seq.io.RichSeqIOAdapter.<init>(RichSeqIOAdapter.java:61) > at > org.biojavax.bio.seq.io.SimpleRichSequenceBuilder.<init>(SimpleRichSequenceBuilder.java:100) > at > org.biojavax.bio.seq.io.SimpleRichSequenceBuilder.<init>(SimpleRichSequenceBuilder.java:81) > at > org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory.makeSequenceBuilder(SimpleRichSequenceBuilderFactory.java:68) > at > org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:109) > at org.pasteur.pf2.biojava.biojavaIO.execute(biojavaIO.java:54) > at org.pasteur.pf2.biojava.biojavaIO.main(biojavaIO.java:29) > Caused by: java.lang.ClassNotFoundException: > org.biojava.utils.bytecode.CodeException > at java.net.URLClassLoader$1.run(URLClassLoader.java:200) > at java.security.AccessController.doPrivileged(Native Method) > at java.net.URLClassLoader.findClass(URLClassLoader.java:188) > at java.lang.ClassLoader.loadClass(ClassLoader.java:307) > at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301) > at java.lang.ClassLoader.loadClass(ClassLoader.java:252) > at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:320) > ... 11 more > > > Do you think this problem can be due to the compiler??? > > Reading through some of the information on the web about NoClassDefFoundError > it should be something like or my class path is messed or something like > that... > > Thanks for any tip/hint and how to identify and solve this problem > > Best, > > Bernd > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: [email protected] http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
