Hi Steve, BioJava can automatically fetch missing chemical component files from the RCSB web site for you. If you set up the PDB file path correctly the files will get cached in that location for future use. As such there should be no need to worry about getting them installed manually (unless you work with offline computers?). If you want access to the single files, you can access them by their three letter code:
http://www.rcsb.org/pdb/files/ligand/TYS.cif Does that work for you? Andreas On Tue, Sep 28, 2010 at 9:29 PM, Steve Darnell <[email protected]> wrote: > Greetings, > > I would like to install a local instance of the Chemical Component > Dictionary (CCD) for use with BioJava's chemical component > functionality. The wwPDB distributes the CCD as a single file; however, > ChemCompGroupFactory.java and related classes expect individual cif.gz > files. > > The individual cif.gz files are downloaded on-the-fly from > http://www.rcsb.org/pdb/files/ligand/, but they are not discoverable > from a web browser. Where can I find the individual files that form the > CCD? Am I overlooking a utility to use the single file version? > > Best regards, > Steve > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- ----------------------------------------------------------------------- Dr. Andreas Prlic Senior Scientist, RCSB PDB Protein Data Bank University of California, San Diego (+1) 858.246.0526 ----------------------------------------------------------------------- _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
