Hi Pola
Welcome and great that you want to plunge in! I don't know much about
MrBayes myself, but the idea was to include a parser in the
biojava3-phylo module. The module uses forester
(https://code.google.com/p/forester/wiki/forester) as the underlying
library to deal with phylogeny data. So the idea would be to parse the
output into a forester data structure (most likely into
org.forester.phylogeny.Phylogeny).
Anyway hopefully someone with a bit more knowledge about this might be
able to add something.
Cheers
Jose
On 31/10/14 18:17, Pola Kyzioł wrote:
Hello,
my name is Pola and I'm currently a third year student in the
Theoretical Computer Science
at Jagiellonian University. I have also interest in biology,
especially in the field of genetics.
I've been searching a project connected with bioinformatics which I
could develop
and next use to writing my bachelor's thesis. I've found BioJava and
looked at its issues -
parser for MrBayes output seems for me to be interesting to code.
I would like to know some details about it:
- what data you want extracted from MrBayes' output files;
- how the created model should look like and if appropriate modules
already exist.
Thanks for your help,
Pola
_______________________________________________
Biojava-l mailing list - [email protected]
http://mailman.open-bio.org/mailman/listinfo/biojava-l
_______________________________________________
Biojava-l mailing list - [email protected]
http://mailman.open-bio.org/mailman/listinfo/biojava-l
