Hi Andreas. Thank you very much for the fixes. Surely it will help me. I have understood the problem you encountered with the old site. Now I will try to apply those things.
Thanks again, Andrea 2016-05-23 19:27 GMT+02:00 Andreas Prlic <[email protected]>: > Hi Andrea, > > Sorry for the inconvenience. We had to turn the old site off, since there > were too many security breaches which resulted in content spamming. This is > across all bio* projects... > > I fixed the links on the CookBook4 page. Checking some of the related > pages, there are still a lot of formatting issues. That will take a bit to > fix them all up. However, each page at the bottom has an "edit this page" > link, which makes it easy to access the raw markdown content. It is > possible to see the code in a more readable way. I also fixed up this page > for now: http://biojava.org/wikis/BioJava:CookBook3:PSA/ > > Hope that helps, > > Andreas > > > > On Sat, May 21, 2016 at 4:09 AM, Andrea Battistelli < > [email protected]> wrote: > >> Hello everyone. >> >> I have been studying the pairwise sequence alignment concept for a >> project that I need to do for an exam. >> In particular I am interested in the global and local alignments and all >> the things related to them (how they are implemented, how I can generate a >> paiwise alignment, ect.). >> I would implement my project in Java employing indeed BioJava as starting >> point. >> I set up correctly the Maven project on Eclipse so no problem under that >> point of view. >> >> Few months ago I have seen there was all the documentation, tutorials and >> specifications about the BioJava project based on the Wiki pages. >> I have seen it has been all migrated into a new web site but now I am not >> finding any documentation, tutorial or cookbook about the topic of personal >> interest. >> >> - In the BioJavaTutorial page - book 2, the alignment module has no pages >> of explanation. >> - In the CookBook4.0, all the links relative to the paiwise sequence >> alignment give me back an "address uninterpretable" message. >> - Finally in the Wiki Pages section there are many links. In some of >> these there are links interesting for me but they contain not well >> formatted codes. >> >> I know that it may taketime to migrate all the things but in the meantime: >> Is there any possibility to have the reference to the old web site? >> Anyone can help me to indicate me where I can find some good pages of >> documentation, tutorial, etc. about pairwise sequence alignment for BioJava? >> >> Thanks a lot. >> >> _______________________________________________ >> Biojava-l mailing list - [email protected] >> http://mailman.open-bio.org/mailman/listinfo/biojava-l >> > > > > -- > ----------------------------------------------------------------------- > Dr. Andreas Prlic > RCSB PDB Protein Data Bank > Technical & Scientific Team Lead > University of California, San Diego > > Editor Software Section > PLOS Computational Biology > > BioJava Project Lead > ----------------------------------------------------------------------- >
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