Hello, Andreas mentioned he created a branch in github to contain my test code:
https://github.com/biojava/biojava/commit/9de8e3633a8d66fc4050f14b2e21684605cf2f7b but I have not heard back in a while. What’s the process/etiquette of getting involved and attempt the fix myself? Thanks, dak From: [email protected] [mailto:[email protected]] On Behalf Of Andreas Prlic Sent: Wednesday, April 19, 2017 4:34 PM To: Rojnuckarin, Dak <[email protected]> Cc: [email protected] Subject: Re: [Biojava-l] Issue with FASTA reader Thanks, Dak. I'll create a branch in git which will contain your test, then we can take it from there. Andreas On Mon, Apr 17, 2017 at 9:43 AM, Rojnuckarin, Dak <[email protected]<mailto:[email protected]>> wrote: Hi, I have a FASTA file that contain one sequence. I initialized FASTA reader as described in the tutorial, called process() and get one record as expected. However, if I re-initialized another FASTA reader opening the same one-record file, called process(1) and null is returned. If I tried to read two-record FASTA file, the first process(1) works, but not the second call to process(1) return null. Based on a superficial glance, it looks like the if statement at line 194 of FastaReader.java may be the culprit. Test code attached. Thanks, Dak Rojnuckarin Research Informatics Amgen _______________________________________________ Biojava-l mailing list - [email protected]<mailto:[email protected]> http://mailman.open-bio.org/mailman/listinfo/biojava-l -- ----------------------------------------------------------------------- Dr. Andreas Prlic RCSB PDB Protein Data Bank Technical & Scientific Team Lead University of California, San Diego Editor Software Section PLOS Computational Biology BioJava Project Lead -----------------------------------------------------------------------
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