Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: 51eebd64 by Andreas Tille at 2021-03-29T21:27:27+02:00 Add missing packages that are in testing - - - - - 6 changed files: - tasks/bio - tasks/bio-dev - tasks/covid-19 - tasks/epi - tasks/imaging - tasks/imaging-dev Changes: ===================================== tasks/bio ===================================== @@ -457,6 +457,8 @@ Recommends: bedops Recommends: biceps Remark: Mentioned at http://www.renard.it/, developed in RKI +Recommends: bio-vcf + Recommends: cnvkit Recommends: csb @@ -1547,6 +1549,8 @@ Recommends: umap-learn Recommends: umis +Recommends: uncalled + Recommends: unicycler Recommends: varna ===================================== tasks/bio-dev ===================================== @@ -14,7 +14,7 @@ X-Importance: Clustering of graphs Recommends: biosquid -Recommends: cwltool, snakemake +Recommends: cwltool, snakemake, python3-wdlparse Suggests: cwlformat @@ -71,7 +71,9 @@ Recommends: libbio-graphics-perl, libbio-coordinate-perl Recommends: libbio-primerdesigner-perl -Recommends: libbio-alignio-stockholm-perl, libbio-cluster-perl, libbio-db-hts-perl, libbio-featureio-perl, libbio-tools-run-remoteblast-perl +Recommends: libbio-alignio-stockholm-perl, libbio-cluster-perl, + libbio-db-biofetch-perl, libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl, + libbio-featureio-perl, libbio-tools-run-remoteblast-perl, libbio-variation-perl Recommends: libace-perl @@ -101,6 +103,8 @@ Recommends: libchado-perl Recommends: libpal-java +Recommends: libpdb-redo-dev + Recommends: libbioparser-dev, libspoa-dev, libedlib-dev, libthread-pool-dev Recommends: libjebl2-java ===================================== tasks/covid-19 ===================================== @@ -578,6 +578,8 @@ Recommends: tnseq-transit Recommends: toil +Recommends: uncalled + Recommends: umis Recommends: workrave ===================================== tasks/epi ===================================== @@ -48,6 +48,8 @@ Recommends: python3-seirsplus Recommends: chime +Suggests: python3-epimodels + Recommends: netepi-analysis Remark: See also: http://www.stockholmchallenge.se/data/2123 and http://www.publish.csiro.au/?act=view_file&file_id=NB07103.pdf ===================================== tasks/imaging ===================================== @@ -48,8 +48,7 @@ Recommends: python3-nipy Why: Although listed in -dev task, it also has a strong focus on interactive data analysis. -Suggests: python-nipype -Comment: py2removal +Recommends: python3-nipype Why: Although listed in -dev task, it also has a strong focus on interactive data analysis. @@ -835,7 +834,7 @@ Vcs-Browser: https://github.com/INCF/one_click Recommends: vrrender -Recommends: bart +Recommends: bart, bart-cuda Recommends: bart-view WNPP: 851431 ===================================== tasks/imaging-dev ===================================== @@ -35,8 +35,7 @@ Why: Suggested by maintainer Michael Hanke <michael.ha...@gmail.com> Recommends: python3-nipy -Suggests: python-nipype -Comment: py2removal +Recommends: python3-nipype Recommends: python3-nitime @@ -81,6 +80,8 @@ Recommends: libopenmeeg-dev Recommends: python3-nibabel +Recommends: python3-brian + Recommends: libgdf-dev, octave-gdf ; Added by blends-inject 0.0.6. [Please note here if modified manually] @@ -132,8 +133,7 @@ Comment: py2removal Recommends: libvigraimpex-dev -Suggests: python-vigra -Comment: py2removal +Recommends: python3-vigra Recommends: libvtk-dicom-dev View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/51eebd643762cda30a82f382c9e537fc02c4b39d -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/51eebd643762cda30a82f382c9e537fc02c4b39d You're receiving this email because of your account on salsa.debian.org.
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