Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: fd3f59a7 by Andreas Tille at 2025-11-22T21:26:50+01:00 Remove gbrowse which is removed from Debian - - - - - 61054d00 by Andreas Tille at 2025-12-18T16:45:07+01:00 Remove r-cran-medadherence which is removed from Debian - - - - - 3 changed files: - debian/changelog - tasks/bio - tasks/practice Changes: ===================================== debian/changelog ===================================== @@ -6,6 +6,8 @@ debian-med (3.9.1) UNRELEASED; urgency=medium * Remove python3-alignlib since replaced by python3-tinyalign * Move blends-dev from Build-Depends-Indep to Build-Depends * Standards-Version: 4.7.2 + * Remove gbrowse which is removed from Debian + * Remove r-cran-medadherence which is removed from Debian [ Charles Plessy ] * Remove r-cran-spp, r-cran-tcr and r-cran-sdmtools (removed from CRAN) ===================================== tasks/bio ===================================== @@ -243,9 +243,6 @@ X-Begin-Category: Genome Browser Recommends: artemis -Recommends: gbrowse -X-Importance: Academic ones are really expensive for commercial use - X-End-Category: Genome Browser Recommends: python3-biomaj3-daemon @@ -2878,19 +2875,6 @@ Pkg-Description: view comparisons of genetic and physical maps CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data. -Recommends: gbrowse-syn -Homepage: http://gmod.org/wiki/GBrowse_syn -License: Not specified -Pkg-Description: Generic Synteny Browser - GBrowse_syn, or the Generic Synteny Browser, is a GBrowse-based synteny - browser designed to display multiple genomes, with a central reference - species compared to two or more additional species. It can be used to - view multiple sequence alignment data, synteny or co-linearity data - from other sources against genome annotations provided by GBrowse. - GBrowse_syn is included with the standard GBrowse package (version 1.69 and - later). Working examples can be seen at TAIR and WormBase. - - Recommends: tripal Homepage: http://tripal.info/ License: GPL ( as Drupal a derivative ) ===================================== tasks/practice ===================================== @@ -16,8 +16,6 @@ Suggests: libctapimkt1 Recommends: freediams, freemedforms-emr -Recommends: r-cran-medadherence - Recommends: entangle Recommends: oscar View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/b42546c1fa73d3fb10fa9b685b3625328eb3eaeb...61054d00fa0c5c43adf6729e5cc1218ab51dfa5c -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/b42546c1fa73d3fb10fa9b685b3625328eb3eaeb...61054d00fa0c5c43adf6729e5cc1218ab51dfa5c You're receiving this email because of your account on salsa.debian.org.
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