Follow-up Comment #6, bug #25356 (project gnustep):
The problem with applications was due to base not getting compiled correctly.
And this was caused by pathconfig. For some reason this seems to ignore the
settings in the installation domain file instead it guesses the domain as
Local and then make ends up reporting a mismatch between the two settings.
Most likely this was due to the fact that I was never able to install base
correctly after this was added. I expect this to work correctly on a fresh
system.
I could now compile and install base once with the right domain and hope that
this resolves the problem.
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