Follow-up Comment #15, bug #30766 (project gnustep):

Further narrowed down to -r28600:r28625 (continuing).

I asked on debian-hppa about some information for the switch from
Linuxthreads to NPTL on hppa -- I remember it was very hard, and there were
some odd details.  It may turn out to be a glibc bug (which explains why I
can't reproduce with glibc 2.7, which is using the old Linuxthreads).  Or
maybe not, so please try to investigate.

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