Dear All, I seem to be having problems with the installation of an image processing application called ITK-SNAP [0, 1]. This is the error message I get:
$ guix environment --pure --ad-hoc itk-snap The following derivations will be built: /gnu/store/qx7cx3gjqc709gla302yyaggbihq9kw0-itk-snap-3.8.0.drv /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv building /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv... | 'configure' phasebuilder for `/gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv' failed with exit code 1 build of /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv failed View build log at '/var/log/guix/drvs/r3/ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv.bz2'. cannot build derivation `/gnu/store/qx7cx3gjqc709gla302yyaggbihq9kw0-itk-snap-3.8.0.drv': 1 dependencies couldn't be built guix environment: error: build of `/gnu/store/qx7cx3gjqc709gla302yyaggbihq9kw0-itk-snap-3.8.0.drv' failed If I understand it correctly, this seems to indicate an underlying problem with vtk-6. As a matter of fact, this also fails: $ guix environment --pure --ad-hoc vtk@6.3.0 The following derivation will be built: /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv building /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv... - 'configure' phasebuilder for `/gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv' failed with exit code 1 build of /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv failed View build log at '/var/log/guix/drvs/r3/ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv.bz2'. guix environment: error: build of `/gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv' failed The output of the following command is attached. $ bzcat /var/log/guix/drvs/r3/ndf5r2ck8n5h5sq4phipdvgmv5bagg\ -vtk-6.3.0.drv.bz2 | tail -n 50 Interestingly, a more recent version of vtk seems to install just fine. $ guix environment --pure --ad-hoc vtk [this works as expected] It may be worth to mention that I'm running Guix on a foreign distribution. This is how my guix self-describes itself: $ guix describe guix 8dcbd8a repository URL: https://git.savannah.gnu.org/git/guix.git branch: master commit: 8dcbd8a374f21f478f0059d4d62e364897e6e667 Is there anything you would suggest I could investigate to solve this? Many thanks, Fabio. - [0] http://www.itksnap.org/ - [1] https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/image-processing.scm?id=8dcbd8a374f21f478f0059d4d62e364897e6e667#n942 -- Fabio Natali https://fabionatali.com
source directory: "/tmp/guix-build-vtk-6.3.0.drv-0/VTK-6.3.0" (relative from build: "../VTK-6.3.0") build directory: "/tmp/guix-build-vtk-6.3.0.drv-0/build" running 'cmake' with arguments ("../VTK-6.3.0" "-DCMAKE_BUILD_TYPE=Release" "-DCMAKE_INSTALL_PREFIX=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DVTK_USE_EXTERNAL=OFF" "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON") -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Check for working C compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -- Check for working C compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -- Check for working CXX compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success CMake Error at CMake/vtkCompilerExtras.cmake:47 (if): if given arguments: "gcc: error: ARGS: No such file or directory gcc (GCC) 7.5.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software" " see the source for copying conditions. There is NO warranty" " not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. " "VERSION_GREATER" "4.2.0" "AND" "BUILD_SHARED_LIBS" "AND" "HAVE_GCC_VISIBILITY" "AND" "VTK_USE_GCC_VISIBILITY" "AND" "NOT" "MINGW" "AND" "NOT" "CYGWIN" Unknown arguments specified Call Stack (most recent call first): CMakeLists.txt:283 (include) -- Configuring incomplete, errors occurred! See also "/tmp/guix-build-vtk-6.3.0.drv-0/build/CMakeFiles/CMakeOutput.log". command "cmake" "../VTK-6.3.0" "-DCMAKE_BUILD_TYPE=Release" "-DCMAKE_INSTALL_PREFIX=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DVTK_USE_EXTERNAL=OFF" "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON" failed with status 1