Hi Mateus,I think I have the problem corrected and here is how 3D_original.nii appears in Caret. If the images look good to you let me know which operating system you are using and I will make an update available for you to download. This problem only occurred if the X-axis was not left/right, the Y-axis was not posterior/anterior, or the Z-axis not inferior/superior.
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---------------------------------------------------------- John Harwell [EMAIL PROTECTED] 314-362-3467 Department of Anatomy and Neurobiology Washington University School of Medicine 660 S. Euclid Ave. Box 8108 St. Louis, MO 63110 USA On Nov 13, 2006, at 3:33 AM, Mateus Joffily wrote:
Hi John, I uploaded four files in Caret, their names are:1) 3D_original.nii : original volume that doesn't display correctly in Caret (case 1 described in my previous message)2) 3D_original_spm5.pdf : capture of 3D_original.nii display in spm51) 3D_resliced.nii : same original volume but resliced (case 2 described in my previous message)1) 3D_resliced_spm5.pdf : capture of 3D_resliced.nii display in spm5 Thank you very much. Mateus John Harwell wrote:Hi Mateus,Can you upload the nifti volume that is not displayed correctly in Caret at "http://pulvinar.wustl.edu/cgi-bin/upload.cgi";. Also, can you capture and upload an image of the volume displayed correctly in SPM5 so that I know how it should appear.After uploading the files, please email me the names of the files. It may be a few days before I can look into this problem.---------------------------------------------------------- John Harwell [EMAIL PROTECTED] 314-362-3467 Department of Anatomy and Neurobiology Washington University School of Medicine 660 S. Euclid Ave. Box 8108 St. Louis, MO 63110 USA On Nov 10, 2006, at 9:42 AM, Mateus Joffily wrote:Hi,I am having some trouble to load nifti images with caret5. The problem is the following:1) When I try to load an image that has a rotation specified in the header, Caret seems not to apply it properly. The displayed image shows a strange orientation and the voxels size is wrong.2) However, when the same image is resliced and no rotation is specified in its header, Caret displays the image correctly, the voxels size are correct and the image origin is also correctly located.Those same images, (1) and (2), are both correctly displayed with SPM5.The images extension is .nii, so I don't think this should be a problem related to image format interpretation (like interpreting nifti images as analyze and ignoring part of the header information).Does anyone else has experienced this problem? Thanks for your help.Mateus _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://pulvinar.wustl.edu/mailman/listinfo/caret-users_______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://pulvinar.wustl.edu/mailman/listinfo/caret-users
