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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear Charles and ccp4bb, The first problem is that even that directory is not created. From the make.log file: making directory: /usr/local/ccp4-6.0/src/phaser/phaser-1.3.2 mkdir: error while loading shared libraries: libc.so.6: cannot open shared object file: No such file or directory Then, other shell (and not) programs (such as touch, grep, awk, cp) fail with the same error about libc.so.6 missing. However, I do have this library as a soft link: /lib/libc.so.6 -> libc-2.3.5.so One reason I have answered so late is that I tried to convert this in a hard link, which broke my system: any command at the shell prompted the same error about libc.so.6 and it became impossible to recover the system. Thus, I had to re-install everything. I'm quite puzzle about this problem. I re-compiled everything as stated in my previous e-mail (Phaser failed again, of course) and then noticed that some x-windows programs still use gfortran even if I set up FC=g77 and F77=g77. These are the programs in the XCCPJIFFY directory. The compile fine with gfortran (4.0) and they do work as expected on a few files I tried. Also, this time I compiled using Tcl/Tk/Blt from Ubuntu. Just in case, I made a link to point 'bltwish' to 'wish'. I haven't found any problems so far with ccp4i. I ran all the tests (run-all in $CCP4/examples/unix/runnable) and got no other error messages than the expected: *** phaser.exam: phaser not found in CBIN I'd appreciate any ideas on how to have phaser compiled. Thank you for your help so far. Cheers, Miguel Charles Ballard wrote: > Hi Miguel, > > under $CCP4/src/phaser/build-final (under several layers giving os and > machine id) are the build logs > for phaser/cctbx. Can you send them to [EMAIL PROTECTED], and we will take > a look. > > Charles Ballard > CCP4 > > On Monday, March 6, 2006, at 10:06 AM, Miguel Ortiz Lombardia wrote: > > Dear Charles, > > As I said in a post that made just a few minutes after receiving your > e-email, I managed to compile everything (but Phaser). I have now tested > mosflm and works wonderfully, at least up to the refinement of the cell. > > I have compiled everything as 64 bit. > > Cheers, > > > Miguel > > Charles Ballard wrote: > >>>> Dear Miguel, >>>> >>>> we regularly build the suite on a RH Enterprise AMD machine (as 64 >>>> bit). The major sticking points are the bltwish and the X11. Last time >>>> I checked blt required some patching to get it to work as a 64 bit >>>> application. The problem with our X libraries is that we only have the >>>> 32 bit libraries, so no 64 bit >>>> applications will compile against them :-). Your vendor supplied >>>> lapack is probably 64 bit, as would be any fftw. >>>> >>>> If you take the 32 bit route, you will either have to ensure that your >>>> compiler defaults to 32 bit, or force it to using -m32 (look at the >>>> linux64 option in the ccp4 configure, it uses -m64). >>>> >>>> Charles Ballard >>>> CCP4 >>>> >>>> >>>> >>>> >>>> On Monday, March 6, 2006, at 02:45 AM, William Scott wrote: >>>> >>>>> >>>>> Dear Tim: >>>>> >>>>> Last time I tried to configure without /usr/bin/bltwish present, the >>>>> configure for ccp4i failed. But I think "last time" was 5.0.2. >>>>> >>>>> In any case, I made a Debian package that contains only the missing >>>>> /usr/bin/bltwish (for i386/i686) should anyone want it. >>>>> >>>>> http://xanana.ucsc.edu/linux/ >>>>> >>>>> All the best, >>>>> >>>>> Bill >>>>> >>>>> On Sun, 5 Mar 2006, Tim Gruene wrote: >>>>> >>>>>> Bill, >>>>>> You do not need to build bltwish on Debian. You can install the >>>>>> blt-library and replace any appearance of bltwish with wish. As far >>>>>> as I >>>>>> remember that is two files, in particular $CCP4/ccp4i/bin/ccp4i. >>>>>> >>>>>> Miguel: >>>>>> Could you redirect the output from make to a log file and >>>>>> post the error message, e.g. for mosflm? >>>>>> >>>>>> It may help to also set F77=g77 when running the configure script, >>>>>> since >>>>>> some configure scripts look for that variable rather than FC. fftw >>>>>> does >>>>>> for example. >>>>>> >>>>>> Cheers, >>>>>> Tim >>>>>> >>>>>> -- >>>>>> Tim Gruene >>>>>> Institut fuer anorganische Chemie >>>>>> Tammannstr. 4 >>>>>> D-37077 Goettingen >>>>>> >>>>>> GPG Key ID = A46BEE1A >>>>>> >>>>>> >>>>>> On Sun, 5 Mar 2006, William Scott wrote: >>>>>> >>>>>>> >>>>>>> Hi Miguel: >>>>>>> >>>>>>> I built CCP4 with ubunto on i386/i686 so I don't know how to >>>>>>> advise, but I >>>>>>> found that I needed to let ccp4 build its own fftw. Also I had to >>>>>>> install >>>>>>> bltwish, as blt that comes with ubuntu (and all Debian linuxes) >>>>>>> apparently >>>>>>> lacks this one file. I don't know if any of that is relevant to >>>>>>> what you >>>>>>> are experiencing. >>>>>>> >>>>>>> Bill >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Sun, 5 Mar 2006, Miguel Ortiz-Lombardia wrote: >>>>>>> >>>>>>>> *** For details on how to be removed from this list visit the *** >>>>>>>> *** CCP4 home page http://www.ccp4.ac.uk *** >>>>>>>> >>>>>>>> >>>> Dear all, >>>> >>>> Has anyone succeded at make a complete build of CCP4 in a AMD64 >>>> system >>>> under Ubuntu? >>>> As advised for i386 using: >>>> >>>> gcc=4.0 >>>> FC=g77 (3.4) >>>> ./configure --with-shared-libs --with-x --with-fftw=/usr linux >>>> >>>> I can compile most of the programs, but some fail, notably phaser and >>>> many X-windows programs, including mosflm. >>>> >>>> Thank you in advance for your help. >>>> Cheers, >>>> >>>> >>>> Miguel >>>> -- >>>> Miguel Ortiz Lombardía >>>> Centro de Investigaciones Oncológicas >>>> C/ Melchor Fernández Almagro, 3 >>>> 28029 Madrid, Spain >>>> Tel. +34 912 246 900 >>>> Fax. +34 912 246 976 >>>> e-mail: [EMAIL PROTECTED] >>>> - >>>> -------------------------------------------------------------------- >>>> >>>>>>>> >>>>>> >>>>> >> - -- Miguel Ortiz Lombardía Centro de Investigaciones Oncológicas C/ Melchor Fernández Almagro, 3 28029 Madrid, Spain Tel. +34 912 246 900 Fax. +34 912 246 976 e-mail: [EMAIL PROTECTED] - ---------------------------------------------------------------------- Et ainsi ne pouvant faire que ce qui est juste fût fort, on a fait que ce qui est fort fût juste. Blaise Pascal, Pensées -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.1 (Darwin) iD8DBQFEDKUmF6oOrDvhbQIRApLLAJ9PwdwF04T8m1jfLgkcenVwK9IrwACgg2b7 CHyXIWY0X9Wb0v4cJo2/718= =KQqj -----END PGP SIGNATURE-----
