*** For details on how to be removed from this list visit the *** *** CCP4 home page http://www.ccp4.ac.uk ***
Maybe my description is not very corrected, but I think it is a problem about software usage. I choose Cavenv, a ccp4 program, because it can alculate cavities in protein structures. It produce a map around Van der Waals radius (or larger radius) of atoms in structurs. So the map showing both a channel and a overall surface of my structure. What I want is the channel not the surface. So I want to know how to remove the surface in the map. In your mail: >From: "Kyeong Kyu Kim" <[EMAIL PROTECTED]> >Reply-To: >To: "'ZhiYi Wei'" <[EMAIL PROTECTED]> >Subject: RE: [ccp4bb]: channel display >Date:Tue, 4 Apr 2006 12:54:51 +0900 > >First of all, please let me know the sequence identity of your protein I > gave you with known structures. You can did it by sequence alignment of your > protein with sequence database of protein data bank (PDB). > > KK > > ZhiYi Wei >Sent: Tuesday, April 04, 2006 12:11 PM >To: [email protected] >Subject: [ccp4bb]: channel display > >*** For details on how to be removed from this list visit the *** >*** CCP4 home page http://www.ccp4.ac.uk *** > > >hi all, > >I used cavenv to display channel in a protein. But cavenv give me a map with >not >only channel but also surface. I don't want to show surface. So has anyone >used >cavenv can tell me how to make the map without surface? > >Thank you in advance. > > > > >------------------------------ >Zhiyi Wei >--------------------------------------------- >Institute of Biophysics, Chinese Academy of Sciences >15 Datun Road, Chaoyang District >Beijing, P.R.China, 100101 >Tel:86-(0)10-64888465 >Fax:86-(0)10-64888513 >--------------------------------------------- >School of Life Sciences, >University of Science & Technology of China, >Hefei, Anhui, P.R.China, 230026 > > >
