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Hello, I have been trying to run DM and getting input errors which go <!-- CCP4 HTML LOGFILE --> <pre>#CCP4I VERSION CCP4Interface 1.4.4.1 #CCP4I SCRIPT LOG dm #CCP4I DATE 21 Sep 2006 15:49:48 #CCP4I USER artis #CCP4I PROJECT PROJECT #CCP4I JOB_ID 7 #CCP4I SCRATCH /tmp/artis #CCP4I HOSTNAME arti.chemistry.montana.edu #CCP4I PID 14818 </pre> ############################################################### ############################################################### ############################################################### ### CCP4 6.0: dm version 6.0 : ## ############################################################### User: artis Run date: 21/ 9/2006 Run time: 15:49:48 Please reference: Collaborative Computational Project, Number 4. 1994. "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50, 760-763. as well as any specific reference in the program write-up. dm: Input error (see above) Times: User: 0.0s System: 0.0s Elapsed: 0:00 </pre> </html> <html> <!-- CCP4 HTML LOGFILE --> <hr> <a name="dmdm"><h1>dm 2.1</h1></a> <pre> </pre> <a href="http://www.yorvic.york.ac.uk/~cowtan/dm/refs.html";>dm reference:</a> <blockquote> K. Cowtan (1994), dm: An automated procedure for phase improvement by density modification. Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, p34-38. </blockquote><p> <a name="tocdm"><h2>Contents</h2></a> <ul> <li><a href="#commanddm">Command input</a> <li><a href="#commentsdm">Comments</a> <li><a href="#mtzindm">MTZ input</a> <li><a href="#datachkdm">Data Checking</a> <li><a href="#datascldm">Data Scaling</a> <li><a href="#solmskdm">Solvent Mask</a> <li><a href="#cyc0001dm">First Cycle</a> <li><a href="#dataoutdm">Output</a> </ul> <a name="commanddm"><h2>Command Input</h2></a> <pre> *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid sub-keyword in position 3 *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid keyword and so on.... This is a new version 6.0.1 ( Red Hat Linux ) running on Suse Linux 10.0. I was running 6.0 on the same earlier and the same error with the same file was not showing up. With that though, I was getting an insufficient memory error asking me to increase the size in ncsautomask. I didnt have the source code then and so updated to 6.0.1 while downloading the src. I havent figured though which .f file it is that I will eventually need to increase the size in. Also, do we download the getax script from somewhere if we want to configure ccp4i for this task. Any help is much appreciated. Thank you. Arti Pandey Chemistry and Biochemistry Montana State University Bozeman, MT 59715
