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You could prepare an mtz-file that really contains only data to 3A and see
whether this avoids the error. If it does not, I guess the simplest would
be to use a machine with more memory or buy more.
Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Tue, 17 Oct 2006, Eleanor Dodson wrote:
Does anyonre know what to do here? Phaser finishes saying:
There is 1.4A data but I had requested it worked with 3A data..
Eleanor
Calculating electron density...
<B><FONT COLOR="#FF8800">
----------------------------------
OUT OF MEMORY ERROR: St9bad_alloc
----------------------------------
</FONT></B>
************************************************************************************
*** Phaser Module: MOLECULAR REPLACEMENT REFINEMENT AND PHASING
1.3.2 ***
*************************************************************************************
-------------------------------
DATA FOR REFINEMENT AND PHASING
-------------------------------
Outliers with a probability less than 1e-06 will be rejected
No reflections are outliers
Space-Group Name (Number): P 1 21 1 (4)
Resolution of All Data (Number): 1.40 46.55 (129167)
Resolution of Selected Data (Number): 1.40 46.55 (129167)
-------------------
WILSON DISTRIBUTION
-------------------
Parameters set for Wilson log-likelihood calculation
E = 0 and variance 1 for each reflection
Without correction for SigF to the variances,
Wilson log(likelihood) = - number of acentrics (126363)
- half number of centrics (2804/2)
= -127765
With correction for SigF,
Wilson log(likelihood) = -133848
------------------
ENSEMBLE ensemble1
------------------
The RmsD of this model with respect to the real structure is 1.48099
Unit Cell: 388.47 212.09 183.32 90.00 90.00 90.00
Calculating electron density...
<B><FONT COLOR="#FF8800">
----------------------------------
OUT OF MEMORY ERROR: St9bad_alloc
----------------------------------
</FONT></B>
--------------------
EXIT STATUS: FAILURE
--------------------
CPU Time: 0 days 0 hrs 24 mins 14.76 secs (1454.76 secs)
Finished: Tue Oct 17 12:37:02 2006
</pre>
</html>
#CCP4I TERMINATION STATUS 1
#CCP4I TERMINATION TIME 17 Oct 2006 12:37:02
#CCP4I TERMINATION OUTPUT_FILES
/y/people/ccp4/projects/MRtests/MRtests_178.sol MRtests
/y/people/ccp4/projects/MRtests/MRtests_178.sum MRtests
#CCP4I MESSAGE Task completed successfully
