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*** CCP4 home page http://www.ccp4.ac.uk ***
Hi Iain -
I too had a number of issues when trying to install CCP4 on Ubuntu -
Martyn was very helpful in working through them with me. I think
Ubuntu, with its clean interface and install, does not install
everything you might need so you have some work to do to make sure
you have all the libraries and headers. Here is what I had to
install (through Synaptic) in addition to what you have mentioned and
what is on the CCP4 site:
libncurses (all)
flex
glkcanvas (I installed a number of variants - not sure which worked)
automake (1.4-1.9)
bltwsh (from Bill Scott)
f2c
gawk
guile
Hope this helps -
Miles
On Oct 24, 2006, at 12:48 PM, Iain Kerr wrote:
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*** CCP4 home page http://www.ccp4.ac.uk ***
I posted the following message last night, but it's not appeared
yet...:
I'm trying to build CCP4 from source on Ubuntu Dapper (6.06)
obtained at:
ftp://ftp.ccp4.ac.uk/ccp4/ccp6.0.1
The build fails at the 'configure' stage:
./configure --with-shared-libs --with-x linux
first error appears during X-windows configuration, then another
later during MOSFLM configuration
X-windows error:
checking prl.h usability... no
checking prl.h presence... yes
configure: WARNING: prl.h: present but cannot be compiled
configure: WARNING: prl.h: check for missing prerequisite headers?
configure: WARNING: prl.h: see the Autoconf documentation
configure: WARNING: prl.h: section "Present But Cannot Be
Compiled"
configure: WARNING: prl.h: proceeding with the preprocessor's result
configure: WARNING: prl.h: in the future, the compiler will take
precedence
configure: WARNING: ##
------------------------------------------ ##
configure: WARNING: ## Report this to the AC_PACKAGE_NAME
lists. ##
configure: WARNING: ##
------------------------------------------ ##
checking for prl.h... yes
checking unq.h usability... no
checking unq.h presence... yes
configure: WARNING: unq.h: present but cannot be compiled
configure: WARNING: unq.h: check for missing prerequisite headers?
configure: WARNING: unq.h: see the Autoconf documentation
configure: WARNING: unq.h: section "Present But Cannot Be
Compiled"
configure: WARNING: unq.h: proceeding with the preprocessor's result
configure: WARNING: unq.h: in the future, the compiler will take
precedence
configure: WARNING: ##
------------------------------------------ ##
configure: WARNING: ## Report this to the AC_PACKAGE_NAME
lists. ##
configure: WARNING: ##
------------------------------------------ ##
Mosflm error:
checking for ccif_init in -lccif... no
configure: WARNING:
*** Can't find the ccif library against which to link.
*** You can set the environment variable CCP4_LIB to point to the
right
directory. Currently this is "/usr/local/programs_xtal/CCP4/
ccp4-6.0.1/lib". If necessary, check the
file `config.log' for other problems.
*** Setting to /usr/local/programs_xtal/CCP4/ccp4-6.0.1/lib
checking for qisnan in -lccp4f... no
configure: WARNING:
*** Can't find the CCP4 library against which to link.
*** You can set the environment variable CCP4_LIB to point to the
right
directory. Currently this is "/usr/local/programs_xtal/CCP4/
ccp4-6.0.1/lib". If necessary, check the
file `config.log' for other problems.
*** Setting to /usr/local/programs_xtal/CCP4/ccp4-6.0.1/lib/src
checking for xdl_open_view in -lxdl_view... no
configure: WARNING:
*** Can't find the xdl_view library against which to link.
*** You can set the environment variable CCP4_LIB to point to the
right
directory. Currently this is "/usr/local/programs_xtal/CCP4/
ccp4-6.0.1/lib". If necessary, check the
file `config.log' for other problems.
*** Setting to /usr/local/programs_xtal/CCP4/ccp4-6.0.1/lib
I've installed the following as per Martyn Winn's pages:
gfortran 4.0.3
m4
bison
libxaw7-dev
libncurses5-dev
flex
Anyone come across this ? I'm still looking..
Thanks,
Iain
Miles Pufall
Postdoctoral Scholar
University of California-San Francisco
600 16th St., Rm S574, Box 2280
San Francisco, CA 94107
(415)476-4480
