Hi,
You can use the make-na server http://structure.usc.edu/make-na/
which uses the Nucleic Acid Builder molecular manipulation language
http://www.scripps.edu/mb/case/casegr-sh-3.2.html.
Output will be a pdb file or a mmCIF if you want. Or you could also
download the program from the second site and install it on your machine
to run locally.
Cheers,
Debanu.
Ibrahim M. Moustafa wrote:
Hi users,
I'm looking for a software that can be used to make a crude 3D
model from an RNA sequence and create a pdb file or other 3D-formats.
It would be nice if the program would allow interactive editing for
the built structure. Ultimately, I want to make a model of the RNA
interacting with the protein of interest to help
visualizing and interpreting some biochemical and genetic data.
Hope someone of the RNA world can help in that.
thanks,
Ibrahim
Ibrahim M.Moustafa, Ph.D.
Pennsylvania State University
Biochemistry & Molecular Biology Dept.
201 Althouse Lab.
University Park, PA16802
Tel (814) 863 8703
Fax (814) 865 7927
