Check also these two fields in generate.inp:
{* convert chainid to segid if chainid is non-blank *}
{+ choice: true false +}
{===>} prot_convert_1=false;
{* separate chains by segid - a new segid starts a new chain *}
{+ choice: true false +}
{===>} prot_separate_1=false;
And check carefully the content of the segid field in your pdb input file.
Michele Lunelli
Department of Cellular Microbiology
Max Planck Institute for Infection Biology
Campus Charité Mitte
Charitéplatz 1
D-10117 Berlin
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