Eleanor Dodson wrote: > It is a bit clunky - you can use siperpose molecules - fit residues to > fit a selected range (1-40; 60-100 say) and write out a complete fitted > pdb file. Then you could use a VERY old program > compar xyzin1 original.pdb xyzin2 fitted.pdb (xyzin3 another.pdb) > and it will match all pairs with the same RESIDUE ID and give the RMSD > distance > > There is documentation for it.
There's a nice (non-CCP4) program called ProFit that does a pretty nice job of superimposing with a lot of flexibility. Thanks, Donnie
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