Dear Mario,
it seems that inside the install script the path variable is not set and
therefore the call to refmac5 fails. We are not sure why this happend in
your case. The install script was tested with both (t)csh and bash and
something in your machine setup was not anticipated by us. Have you run
the install.sh utility in the same terminal/shell, in which you later
verified your refmac installation by typing 'refmac5 -i'? Could it be
that you need to run some setup util for ccp4 manually before?
To get you started with ARP/wARP we can send you a taylored install
script with some diagnostic output to find a fix. In the meanwhile, can
you try to change the line
alias runtestrefmac 'refmac5 -i' (line 16 in install_csh.sh)
to incorporate the absolute path to the refmac5 binary? "Which refmac5"
should provide you with this.
Regards,
Gerrit and Victor.
Mario Sanches wrote:
Dear all,
I am trying to install arp/warp and I am stuck with the following error:
------------------------------------------------------------------------------------------------------
Checking refmac5 installation - refmac5: Command not found.
*** ERROR ***
Cannot execute refmac5
*** INSTALLATION OF ARP/wARP 7.0.1 FAILED ***
------------------------------------------------------------------------------------------------------
CCP4 is installed and refmac5 is running. A few more information:
The system is Kubuntu 7.10
My shell is bash (tried tcsh as well and got the same error)
Typing refmac5 -i returns:
------------------------------------------------------------------------------------------------------
CCP4 software suite: library version 6.0
CCP4 software suite: patch level 6.0.2
Program: refmac5; version 5.2.0019
------------------------------------------------------------------------------------------------------
when I type refmac5 I get:
------------------------------------------------------------------------------------------------------
###############################################################
###############################################################
###############################################################
### CCP4 6.0: Refmac_5.2.0019 version 5.2.0019 : 06/09/05##
###############################################################
User: manager Run date: 17/ 3/2008 Run time: 09:45:33
Please reference: Collaborative Computational Project, Number 4. 1994.
"The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst.
D50, 760-763.
as well as any specific reference in the program write-up.
<!--SUMMARY_END--></FONT></B>
$TEXT:Reference1: $$ comment $$
"Refinement of Macromolecular Structures by the Maximum-Likelihood
Method:"
G.N. Murshudov, A.A.Vagin and E.J.Dodson,(1997)
Acta Crystallogr. D53, 240-255
EU Validation contract: BIO2CT-92-0524
$$
$SUMMARY :Reference1: $$ Refmac: $$
:TEXT:Reference1: $$
------------------------------------------------------------------------------------------------------
Thank you all in advance for any help.
