On 4 Apr 2008, at 01:36, Michael Giffin wrote:
i get the same error on OS X 10.5.2 and 10.4.11:
sfcheck -f refmac2.mtz -m refmac2.pdb -out y -nomit 2 -map
the error:
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Open failed: Unit: 11, File: sfcheck_scr.dat (logical:
sfcheck_scr.dat)
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
Last system error message: Bad file descriptor
CCP4: Open failed: File: sfcheck_scr.dat
CCP4: Open failed: File: sfcheck_scr.dat
----------------------------------------------------
the binary file sfcheck_scr.dat exists.
Hi Mike,
I encountered the same exact issue under OS X not long ago, and it
turned out to be caused by memory/atom limitations of Fink's sfcheck
(I assume that's what you are using?):
Sol_ --- SFCHECK --- /Vers 7.2.02; 01.10.2006/ -
Sol_ Memory: 30 Mb N_atom_max: 50000 - <= !!!
so that using the sfcheck binary included with BALBES:
Sol_ --- SFCHECK --- /Vers 7.02.4; 02.05.2007/ -
Sol_ Memory: 60 Mb N_atom_max: 100000 -
solved the problem. How many atoms are you playing with?
HTH, Luca
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Luca Jovine, Ph.D.
Karolinska Institutet
Department of Biosciences and Nutrition
Hälsovägen 7, S-141 57 Huddinge, Sweden
Voice: +46.(0)8.6083-301 FAX: +46.(0)8.6089-290
E-mail: [EMAIL PROTECTED]
W3: http://ki.se
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