Did you set the weight (X-ray.vs.Geom.) too high? In principle, at
3A a relatively smaller weight than default (0.3?) may be used.
On Aug 2, 2008, at 8:39 AM, Yusuf Akhter wrote:
Hi Everybody,
I am refining structure of a protein at 3 Angstrom. I am doing
model building in
Coot.
After several rounds of refinement using Refmac when I tried to run
PROCHECK on
my partially build model I found that some of the residues are D-
amino acids.
How to change these D-amino acids to L-amino acids??
Is there any option in Coot for that??
Thanks in advance,
yusuf
--
Yusuf Akhter
EMBL Hamburg c/o DESY, Notkestraße 85,
22603 Hamburg, Germany
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Lijun Liu, PhD
Institute of Molecular Biology
HHMI & Department of Physics
University of Oregon
Eugene, OR 97403
541-346-4080
