We put our raw data, plus metadata here: http://www.tardis.edu.au
JCSG also make data available, but I think its just an archive, with
little or no annotation
cheers
Ashley
On 24/09/2008, at 7:02 AM, afyfe wrote:
Dear Tommi,
I'm not sure whether 'test data sets part I' relates to the query
I mailed the other day but, in light of the recent posts
regarding fundamental literature, your suggestion seems an
excellent one.
Perhaps I'm not looking in the right places, but finding examples of
image sets exhibiting e.g., radiation damage, crystal slippage,
autoindexing failures or any of the aberrations shown in Phil Evans'
excellent scala tutorial seems difficult. Likewise for examples of
good and bad final-refinement maps. Making primary/intermediate data
available would benefit both students and algorithm comparison/
validation (e.g. measuring performance on standard data sets is
routine in data-visualization/image-processing papers).
Tommi Kajander wrote:
Also, i think that would be nice if this type of info could be put
on the web, part of the wiki for instance..
if there is some consensus to what works + the typical proteins
easily available.
Tommi Kajander, Ph.D.
Structural Biology and Biophysics
Institute of Biotechnology
University of Helsinki
Viikinkaari 1
(P.O. Box 65)
00014 Helsinki
Finland
p. +358-9-19158903
[EMAIL PROTECTED]
--
Alastair Fyfe
Graduate Student
Biomolecular Engineering Dept.
University of California, Santa Cruz
Associate Professor Ashley M Buckle
NHMRC Senior Research Fellow
The Department of Biochemistry and Molecular Biology
School of Biomedical Sciences, Faculty of Medicine &
Victorian Bioinformatics Consortium (VBC)
Monash University, Clayton, Vic 3800
Australia
http://www.med.monash.edu.au/biochem/staff/abuckle.html
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skype: ashley.buckle
Tel: (613) 9902 0269 (office)
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