Roger Rowlett wrote:
I will second noting the loss of arp_waters in CCP4 6.1. I know there
is a "find waters" option in Coot 0.5.2 under "Calculate...Other
modeling tools", and perhaps this is adequate, but it doesn't seem to
have as many options for fine-tuning as arp_waters did. Coot allows
for finding waters above a certain sigma value; arp_waters allowed
this option plus setting minimum and maximum hydrogen bonding
distances between heavy atoms.
May I be so bold as to point you to the documentation?
http://www.ysbl.york.ac.uk/~emsley/coot/doc/chapters/user-manual_5.html#SEC127
If you want to use a command line program, type findwaters on the
command line and it will give a short description of the parameters it
takes.
(It is also documented in section 9.1 of the manual.)
Paul.
