Hi all,
yes, re-running jobs was the issue. So, creating a new job did the
trick.
Thanks for all the various feedback!
Jan
On Mar 6, 2009, at 12:43 AM, Paul Fyfe wrote:
Hi Jan,
I had exactly the same problem. It happens (for me) when you try and
re-run a job created for a previous version of refmac. All you need
to do is create a new Refmac job and it should work.
Cheers,
Paul
------------------------------------------------------------------------------------
Dr Paul K. Fyfe
Division of Biological Chemistry and Drug Discovery
College of Life Sciences
MSI/WTB Complex
University of Dundee
Dow Street
Dundee DD1 5EH
------------------------------------------------------------------------------------
Jan Abendroth <jan.abendr...@gmail.com> 03/06/09 6:40 AM >>>
Hi all,
I keep on getting the following error message when I try to start a
refmac job through ccp4i with ccp4 version 6.1.1. This initially only
happened in a linux installation, now all of a sudden appeared in a
osx installation as well. The interface hangs when starting the job.
It also occurs for files that refined w/o any problems before. Any
ideas what is going on here?
Thanks for any input.
Jan
~~~~~~~
Top level CCP4 directory is /usr/local/ccp4-6.1.1
Using CCP4 programs from /usr/local/ccp4-6.1.1/bin
can't set "ATOM(0)": variable isn't array
while executing
"set [subst $root]([subst $indx0]) """
(procedure "ExecuteScript" line 50)
invoked from within
"ExecuteScript $system(SCRIPT)"
("script" arm line 8)
invoked from within
"switch $system(RUN_MODE) \
script {
source [file join $env(CCP4I_TOP) src execute.tcl]
source [file join $env(CCP4I_TOP) src job_utils..."
(file "/usr/local/ccp4-6.1.1/share/ccp4i/bin/ccp4ish.tcl" line
145)
invoked from within
"source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]"
(file "/usr/local/bin/ccp4ish" line 12)
--
Jan Abendroth
deCODE biostructures
Seattle / Bainbridge Island WA, USA
work: JAbendroth_at_decode.is
home: Jan.Abendroth_at_gmail.com
The University of Dundee is a registered Scottish charity, No:
SC015096
--
Jan Abendroth
deCODE biostructures
Seattle / Bainbridge Island WA, USA
work: JAbendroth_at_decode.is
home: Jan.Abendroth_at_gmail.com
