Thomas, The Areaimol program within the CCP4 suite should do what you're looking for: http://www.ccp4.ac.uk/html/areaimol.html Although its a calculation of surface accessability, you can delete sections of your protein to get at the buried area between two sections of your protein.
Cheers, Jim On Fri, Mar 20, 2009 at 2:48 PM, Jhon Thomas <jhon1.tho...@gmail.com> wrote: > Hello all > > can any one suggest any server or tool which can calculate the burried > surface area between the domains of the same monomer? PISA calculates the > interfacial surace area between the monomer or oligomer. Can areamol > calculate it? > > Thanks in advance > > Thomas > -- Jim Fairman Graduate Research Assistant Department of Biochemistry, Cellular, and Molecular Biology (BCMB) University of Tennessee -- Knoxville 216-368-3337 jfair...@utk.edu james.fair...@case.edu
