Hi -
Also (low-)density-dependent but keen to build realistic conformations
is LOOPY from ARP/wARP.
A.
On 1 Nov 2009, at 22:52, Pavel Afonine wrote:
Hi Tommi,
if the map shows some density for that loop, I would try two programs
(those I'm familiar with):
1) phenix.fit_loops (need to have PHENIX for this):
http://www.phenix-online.org/documentation/fit_loops.htm
http://www.phenix-online.org/
2) Xpleo:
http://smb.slac.stanford.edu/~vdbedem/
Pavel.
On 11/1/09 4:29 AM, Tommi Kajander wrote:
Dear all
I was wondering if anyone knows a simple way to generate a missing
loop (strech of amino acids)
really in just some simple manner (no fancy minization necessary, of
course some constraints probably dont
hurt), just for visualization purposes of further simulations etc....
thanks!
tommi
