Hi,
When I use the superpose program for SSM alignment with these two structures in
the following command line:
superpose 3BT1.pdb -s B 1OC0.pdb -s B superposed.pdb
The screen output reads:
PDB file 3BT1.pdb has been read in.
... 312 atoms selected using CID 'B'
PDB file 1OC0.pdb has been read in.
... 289 atoms selected using CID 'B'
Transformed coordinates will be written to file superposed.pdb
*** empty graph for 1OC0.pdb.
If I try loading the same structures (or just use the PDB codes) in the SSM server http://www.ebi.ac.uk/msd-srv/ssm/cgi-bin/ssmserver it seems to work just fine.
Does anybody know how to avoid this error?
Many thanks,
Rob
--
Robert Oeffner, Ph.D.
Research Associate
Department of Haematology, University of Cambridge
Cambridge Institute of Medical Research
Wellcome Trust / MRC Building, Hills Road, Cambridge, CB2 0XY
www-structmed.cimr.cam.ac.uk, tel:01223763234, mobile:07712 887162
