Hi Ronnie,
the (a) Mammoth tool might also work (but I just tried 6 structures or so when I used it a couple years ago - not 20). Jan --- Ronnie Berntsson <r.bernts...@rug.nl> schrieb am Di, 12.1.2010: Von: Ronnie Berntsson <r.bernts...@rug.nl> Betreff: [ccp4bb] off topic: multiple structural sequence alignment An: CCP4BB@JISCMAIL.AC.UK Datum: Dienstag, 12. Januar 2010, 13:17 Dear all, A bit off the topic question perhaps. I am trying to find a program which can do multiple structural sequence alignments. What I would like is a program which can take as input PDB codes (or files), and which will output a multiple sequence alignment in FASTA format with the full sequences of the supplied proteins intact. Preferably said server/program should be able to handle at least 20 input pdbs at once. I've been looking around, but have so far failed to find a program which does this. If anyone knows of a program or server which could handle this, I would be very grateful. Cheers, Ronnie Berntsson __________________________________________________ Do You Yahoo!? Sie sind Spam leid? Yahoo! Mail verfügt über einen herausragenden Schutz gegen Massenmails. http://mail.yahoo.com
