Dear Nasos & Hailiang, Gerard Kleywegt's MAPMAN calculates the RSR, discussed here:
http://xray.bmc.uu.se/usf/mapman_man.html#S41 Mark On 21 May 2010 23:54, Athanasios Dousis <ndou...@rice.edu> wrote: > Hello all, > > I'm forwarding a question from my labmate Hailiang Zhang regarding > OVERLAPMAP and real-space R factors. > > Thanks in advance for your suggestions. > > Nasos Dousis > Rice University > > P.S. Can someone please add haili...@bcm.tmc.edu to the CCP4BB listserv? > > -------- Original Message -------- Subject: calculate the real space R > factor using OVERLAPMAP Date: Fri, 21 May 2010 17:48:47 -0500 From: Zhang, > Hailiang <haili...@bcm.tmc.edu> <haili...@bcm.tmc.edu> To: > ndou...@rice.edu <ndou...@rice.edu> <ndou...@rice.edu> > > Hi, > > I wanted to calculate the real space R factor using OVERLAPMAP. According to > the general definition of real space R value > (http://reference.iucr.org/dictionary/Real-space_residual), everything should > be absolute value in the formula. However, the results by OVERLAPMAP were > giving massive negative values. I also checked OVERLAPMAP documentation and > found that the absolute sign seems absent in the R factor formula > )http://smb.slac.stanford.edu/facilities/software/ccp4/html/overlapmap.html). > I was just wondering whether there is some other tools in eg CCP4, Phenix or > CNS to calculate real-space R in the general way in absolute values. > > Thanks! > > -- Skype: markabrooks