I would also recommend STRAP if you haven't tried it ( http://www.bioinformatics.org/strap/)
On Tue, May 25, 2010 at 2:53 PM, Jürgen Bosch <jubo...@jhsph.edu> wrote: > http://ww2.cs.mu.oz.au/~arun/Site/mustang.html > > > http://tcoffee.vital-it.ch/cgi-bin/Tcoffee/tcoffee_cgi/index.cgi?stage1=1&daction=EXPRESSO(3DCoffee)::Regular > > or maybe what you are searching for is Consurf ? > http://consurf.tau.ac.il/ > > Jürgen > > On May 25, 2010, at 2:39 PM, Muhammed bashir Khan wrote: > > Dear All; > > Can some body tell me a website for structure based sequence alignment, > which can also pin point the similar and identical residues in different > colors. > > regards > > Bashir > > > > > -- > Muhammad Bashir Khan > Department for Biomolecular Structural Chemistry > Max F. Perutz Laboratories > University of Vienna > Campus Vienna Biocenter 5 > A-1030 Vienna > Austria > > Phone: +43(1)427752224 > Fax: +43(1)42779522 > > > - > Jürgen Bosch > Johns Hopkins Bloomberg School of Public Health > Department of Biochemistry & Molecular Biology > Johns Hopkins Malaria Research Institute > 615 North Wolfe Street, W8708 > Baltimore, MD 21205 > Phone: +1-410-614-4742 > Lab: +1-410-614-4894 > Fax: +1-410-955-3655 > http://web.mac.com/bosch_lab/ <http://web.me.com/bosch_lab/> > > -- Jim Fairman, Ph D. Post-Doctoral Fellow National Institutes of Health - NIDDK Cell: 1-865-748-8672 Lab: 1-301-594-9229 E-mail: fairman....@gmail.com james.fair...@nih.gov
