Hi Tim, There will be a cctbx.python dispatcher now which should set everything up - however if you source setpaths_debug I think this should make for a happy python as it includes everything from the dispatcher.
At least, that was my understanding. best wishes, Graeme On 23 June 2010 16:17, Tim Gruene <t...@shelx.uni-ac.gwdg.de> wrote: > Ok, I just did that. > After sourcing setpaths.sh, PYTHONHOME is set to /path/to/cctbx_build > > When I start python and enter > from cctbx import sgtbx > > I get an error message about a missing __init__.py > > The whole cctbx_build does not contain a single __init__.py\*, but there are > plenty in ../cctbx_sources. > > I don't think I missed a step as explained on the page given below. Did I miss > anything else? > > The tests worked fine, I only noticed OK's. > > Since the page describes libtbx.scons to be similar to make, do I have to > issue > something like 'libtbx.scons install' after everything was built? > > Cheers, Tim > > On Wed, Jun 23, 2010 at 03:27:32PM +0100, Graeme Winter wrote: >> Dear Tim, >> >> There are instructions on how to build cctbx against your system >> Python (which I assume is the one used by PyMol) here: >> >> http://cctbx.sourceforge.net/current/installation.html#manually-building-from-sources-under-unix >> >> >From there you can also install other Python modules e.g. Numpy in the >> usual manner, assuming you do not already have these installed. >> >> Best wishes, >> >> Graeme >> >> On 23 June 2010 15:23, Tim Gruene <t...@shelx.uni-ac.gwdg.de> wrote: >> > Dear Carsten, >> > >> > thank you for the instruction. The cctbx package seems to lack tkinter >> > which is >> > required by pymol (and maybe numpy, too). How do I install a specific >> > python >> > module (package? what's the correct term?) 'under' cctbx.python? >> > >> > Cheers, Tim >> > >> > On Wed, Jun 23, 2010 at 09:07:36AM -0400, Schubert, Carsten [PRDUS] wrote: >> >> Tim, >> >> >> >> I'm shooting from the hip here, but I think the problem is that cctbx >> >> comes with its own python, which you would need to run both pymol and >> >> numpy under. According to Ralf it is at least not trivial to utilize the >> >> system python to run cctbx. So I think you need to compile/install pymol >> >> against cctbx.python and install it as a module under cctbx.python. >> >> Similar deal for numpy, which may already be available in cctbx, if not >> >> installation should be straightforward. >> >> >> >> These broad steps may work (again shooting from the hip...) >> >> -Install cctbx >> >> -link cctbx.python to python and make sure its first in your path (may >> >> be optional) >> >> -install numpy under cctbx.python (if not already present) >> >> -compile and install open.pymol against the cctbx.python, either via the >> >> renaming trick >> >> above or calling cctbx.python setup.py (build/install) >> >> >> >> Good luck, let us know how it works... >> >> >> >> Carsten >> >> >> >> >> >> >> >> > -----Original Message----- >> >> > From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of >> >> > Tim Gruene >> >> > Sent: Wednesday, June 23, 2010 8:35 AM >> >> > To: CCP4BB@JISCMAIL.AC.UK >> >> > Subject: [ccp4bb] pymol python and cctbx >> >> > >> >> > Dear all, >> >> > >> >> > I've been trying to install the SuperSym module for pymol (svn trunk >> >> > version of pymol as of today, 1.3.x). Upon restart the console says >> >> > "Ooops! SuperSym requires cctbx and numeric python to function. >> >> Please >> >> > install these." >> >> > >> >> > The system is i7 with Debian Testing 64bit with python2.5 (although >> >> > python2.6 is also installed but not the default). cctbx was installed >> >> > using cctbx_fedora8_x86_64_py265_inc.selfx and the installation output >> >> > did not imply any issues, e.g. about the wrong python version (and I >> >> > did only find cctbx packages for python 2.6.5 on their web site). >> >> > >> >> > python-numpy is install which I believe is the "numeric python" the >> >> > module output complains about. >> >> > >> >> > Would anyone be so kind to direct someone who despises python (phyuuu, >> >> > that >> >> > helped...) to how to get the SuperSym module to work with pymol? A >> >> > start would be if the module would tell me whether it complains about >> >> > missing numeric python or cctbx or both. >> >> > >> >> > Do I have to compile pymol with python2.6? Just starting pymol with >> >> > python2.6 did not change anything. >> >> > >> >> > Thanks a lot, Tim >> >> > >> >> > >> >> > -- >> >> > Tim Gruene >> >> > Institut fuer anorganische Chemie >> >> > Tammannstr. 4 >> >> > D-37077 Goettingen >> >> > >> >> > GPG Key ID = A46BEE1A >> > >> > -- >> > -- >> > Tim Gruene >> > Institut fuer anorganische Chemie >> > Tammannstr. 4 >> > D-37077 Goettingen >> > >> > GPG Key ID = A46BEE1A >> > >> > >> > -----BEGIN PGP SIGNATURE----- >> > Version: GnuPG v1.4.9 (GNU/Linux) >> > >> > iD8DBQFMIhjbUxlJ7aRr7hoRAtF0AJoD+AosjYDnPShy5T4+rh/4xiABUQCg+Amu >> > nmxBu9tMBneoDCfxsWxQyPc= >> > =WL5a >> > -----END PGP SIGNATURE----- >> > >> > > > -- > -- > Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > GPG Key ID = A46BEE1A > > > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.9 (GNU/Linux) > > iD8DBQFMIiWRUxlJ7aRr7hoRAuLnAKD1uD4TZQ2i2hthGZWyvIL+FjJF9gCfTXD9 > t7n5aCPkxfznwz/lGWOuNWA= > =LDwq > -----END PGP SIGNATURE----- > >
