I would normally do the second, unless they are pretty clearly nonisomorphous. 
If you combine them in Pointless, this will reset the batch numbers 
automatically.

Phil


On 2 Jul 2010, at 05:35, Fengyun Ni wrote:

> Hi all,
> 
> I have a question on how to combine two dataset from different crystal of
> the same
> protein.
> 
> The first way I could think of is that,
> 1) Merge two dataset seperately;
> 2) Scale them to see whether they are consistent with each other enough as
> indicated by
> the R-factor;
> 3) If the R is low enough, say below 10 or 15%, then take the average for
> both the F and
> SIGF.
> 
> The other way is that,
> 1) Take the unmerged file from MOSFLM, and reset their batch number;
> 2) Run SCALA to scale these two unmerged dataset at the same time.
> 
> Could anyone tell which way is the better or the correct way?
> Thank you in advance!
> 
> -- 
> alphar

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