On Thu, 2010-12-09 at 01:09 +0900, Keitaro Yamashita wrote:
> When I tried to refine using Refmac5, the output told many vdw
> repulsions with symmetry mates
What do you mean by that? I had a similar situation recently, and there
are many records in the log file that say something like this
INFO: link is found (not be used) dist= 1.531 ideal_dist=
1.500
ch:AA res: 217 GLN at:C .->ch:FF res: 217 GLN
at:CA .
Note the "not be used" part. AFAIU, these clashes are simply reported
but ignored in refinement. Perhaps some keyword like "monitor none"
shall turn these warnings off, but other than making your log-files very
long it's not a problem.
--
"I'd jump in myself, if I weren't so good at whistling."
Julian, King of Lemurs
