I observe under some conditions that ctruncate sets some reflections amplitudes to zero. AFAIU, this should not be happening as even negative intensities (there are none in this particular dataset) should produce FP>0 upon truncation.
66 out of ~23000 reflections are zeros after ctruncate is applied. Nothing obvious comes up upon inspecting the corresponding hkl's, except that one and only one is always zero (sg is P21212, so these are not systematic absences). One curious thing is that the I/sigma for these reflections is close to the average I/sigma in the highest resolution range (but it varies and these reflections are in all resolution ranges). A bug? -- "I'd jump in myself, if I weren't so good at whistling." Julian, King of Lemurs