Robert Immormino
Does this service answer you question. It is limited to 10,000 return
results for the statistical analysis so it is possible to ask general
questions
where the statistics are truncated.
http://www.ebi.ac.uk/pdbe-as/pdbestatistics/PDBeStatisticsAtom.jsp
Tom Oldfield
Hi Cale,
My advice would be to find someone local with experience in scripting
possibly in python or perl. This is a tractable problem with a bit of
scripting and if you aren't already experienced this may be a good
opportunity to delve into a bit of programing.
Good Luck,
-bob
On Tue, Mar 8, 2011 at 7:20 PM, Cale Dakwar<c.dak...@gmail.com> wrote:
Thanks for the quick reply. This is a very good resource but not quite what
I need. As far as I can tell, this resource is based on a dataset from
10-08-1998 and then only included x-ray crystal structure with better than 2
angstrom data. I also can't in this database a mention of the PDB
structures in which e.g. the shortest His-His distances have been observed.
- C
On Tue, Mar 8, 2011 at 6:19 PM, Ed Pozharski<epozh...@umaryland.edu> wrote:
On Tue, 2011-03-08 at 17:44 -0500, Cale Dakwar wrote:
Amongst other things, I want e.g. generate a histogram from this table
and determine e.g. the shortest HisND1 pair distance observed and the
structure in which this happens.
For this specific question this can be useful
http://www.biochem.ucl.ac.uk/bsm/sidechains/index.html
--
"I'd jump in myself, if I weren't so good at whistling."
Julian, King of Lemurs
