Hi Bill - Thanks for the fix. I'll make the changes on the affected computers. Alternatively, I may just have them download the newest package, which appears to work fine on my machine.
Thanks again for the help, and for providing these builds to the community! Jared -- Jared Sampson Xiangpeng Kong Lab NYU Langone Medical Center New York, NY 10016 212-263-7898 On Mar 10, 2011, at 5:46 PM, William G. Scott wrote: > Sorry about this. > > Issue the command > > sudo perl -pi -e > 's|/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6\:/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5\:||g' > /Library/Coot/bin/coot > > and that will fix it. > > I'll make a new one. > > Bill > > > On Mar 10, 2011, at 7:55 AM, Sampson, Jared wrote: > >> Hi all - >> >> Two of the grad students in our structural biology course are having similar >> problems installing Coot on their Mac computers using the stand-alone >> packages<http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/Stand-Alone_Coot> >> from Bill Scott's Crystallography on OS X website. I've pasted the Terminal >> outputs below from each of their machines below. >> >> They're both getting Python "magic number" errors, which from what I know >> result from one Python version trying to run a .pyc file created with >> another Python version, but I'm not sure exactly how to work around it in >> the context of the stand-alone package. The students aren't planning to do >> much in the structural realm outside the course, and I don't want to have to >> go through installing Xcode and Fink to compile on their own, since they >> probably won't need it much past this one assignment. >> >> Any suggestions would be greatly appreciated. Thanks! >> >> Jared Sampson >> >> >> >> First student (3 week-old Macbook Pro, 10.6.6, stand-alone package for >> Version 0.6.2-pre-1-3250) >> ==================== >> $ coot >> Acquiring application resources from /Library/Coot/share/coot/cootrc >> INFO:: splash_screen_pixmap_dir /Library/Coot/share/coot/pixmaps >> INFO:: Colours file: /Library/Coot/share/coot/colours.def loaded >> There are 118 data in >> /Library/Coot/share/coot/lib/data/monomers/list/mon_lib_list.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ALA.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASP.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASN.cif >> [... and a bunch more monomers ...] >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/u/UR.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif >> There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif >> sbase monomer dir: /share/sbase >> sbase files not found in /share/sbase >> Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb >> PDB file /Library/Coot/share/coot/standard-residues.pdb has been read. >> Spacegroup: P 1 >> Cell: 40.631 109.18 93.243 90 90 90 >> initalize graphics molecules...done. >> (filter-fileselection-filenames-state) >> (get-active-map-drag-flag) >> ImportError: Bad magic number in >> /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site.pyc >> ==================== >> >> >> second student (Macbook, 10.6.5, also Version 0.6.2-pre-1-3250) >> ==================== >> $ /usr/local/bin/coot >> Acquiring application resources from /Library/Coot/share/coot/cootrc >> INFO:: splash_screen_pixmap_dir /Library/Coot/share/coot/pixmaps >> INFO:: Colours file: /Library/Coot/share/coot/colours.def loaded >> There are 118 data in >> /Library/Coot/share/coot/lib/data/monomers/list/mon_lib_list.cif/ >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ALA.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASP.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASN.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CYS.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLN.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLY.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLU.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/p/PHE.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HIS.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/i/ILE.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/l/LYS.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/l/LEU.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/m/MET.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/e/ETH.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CIT.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/AR.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/AD.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CR.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CD.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GR.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GD.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/t/TD.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/u/UR.cif >> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif >> There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif >> sbase monomer dir: /share/sbase >> sbase files not found in /share/sbase >> Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb >> PDB file /Library/Coot/share/coot/standard-residues.pdb has been read. >> Spacegroup: P 1 >> Cell: 40.631 109.18 93.243 90 90 90 >> initalize graphics molecules...done. >> (filter-fileselection-filenames-state) >> (get-active-map-drag-flag) >> ImportError: Bad magic number in >> /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site.pyc >> ==================== >> >> >> >> >> -- >> Jared Sampson >> Xiangpeng Kong Lab >> NYU Langone Medical Center >> New York, NY 10016 >> 212-263-7898 >> >> >> ------------------------------------------------------------ >> This email message, including any attachments, is for the sole use of the >> intended recipient(s) and may contain information that is proprietary, >> confidential, and exempt from disclosure under applicable law. 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