You can change the target torsion angle for the double bond in the .cif file that is created when your molecule is created.
--Subhangi On Fri, Apr 22, 2011 at 3:11 PM, Jim Fairman <fairman....@gmail.com> wrote: > I am attempting to create a monomer with a cis-double bond using Sketcher, > but every time I tell sketcher to create the library files it makes the > double bond a trans-double bond. Can anyone assist me with information on > how to force it to remain cis? > > -- > Jim Fairman, Ph D. > Post-Doctoral Fellow > National Institutes of Health - NIDDK > The Buchanan Lab <http://www-mslmb.niddk.nih.gov/buchanan/index.html> > Lab: 1-301-594-9229 > E-mail: fairman....@gmail.com james.fair...@nih.gov > >
