Hi Eric,

On Wed, 4 May 2011, jlliu liu wrote:

Hi All,

I have two questions for Pymol.

the pymol wiki is your friend (http://www.pymolwiki.org/index.php/Main_Page)

as is the pymol users mailing list 
(http://sourceforge.net/mail/?group_id=4546).  Follow the link to subscribe.


1. Can you write out the PDB file after structural alignment?

yes you can (http://www.pymolwiki.org/index.php/Save)

2. How to only show structure that is several angstrom from the ligand?

use the selection algebra rules 
(http://www.pymolwiki.org/index.php/Selection_Algebra)

happy pymoling,

Eric


Thanks a lot in advance!

Eric



================================
Eric T. Larson, PhD
Biomolecular Structure Center
Department of Biochemistry
Box 357742
University of Washington
Seattle, WA 98195

email: larso...@u.washington.edu
================================

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