Wenhe
There is a ligand environment viewer at the URL below that plots
environments of ligands
in various view types. At the moment is only works on existing
structures since the ligands
have to be correctly typed with correct dictionaries.
This has a number of export formats.
http://www.ebi.ac.uk/pdbe-srv/leview/
The EBIAstexViewer
http://www.ebi.ac.uk/pdbe-srv/view/entry/1cbs/viewer
Also has a chemistry viewer (menu -> Chemistry) which shows the ligand
in 2D with the
environment and various options. You asked for plotting - so I guess
you want an export
format so I am not sure if this is suitable.
Regards
Tom Oldfield
Dear all,
I would like to know what program/software you usually use to plot the 2D
interactions between ligand and protein. As far as I know, LigPlot is powerful
but need some skills. Also a web-based program from PDB server is easy to use
but not very powerful.
What is your recommendation? Thank you.
King regards,
Wenhe
