Dear All, A bit offtopic question,
Does any body know how can I get the PIR output of the aligned sequence from clustal omega. I have a full length protein solved, to give weightage during comparitive modelling, I use domains of the same/similar protein solved before. I expect an alignment something that looks like one below, and clustalw does'nt seems to work , but clustal omega does it. But there is no .pir format output. 1.cccccccccccccaaaaaaaaaabbbbbbbb 2.-------------------------------------bbbbbbbb 3.ccccccccccccc------------------------------ 4.------------------aaaaaaaaaaa-------------- Thanks S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany.
