Re: [ccp4bb] Pairwise distance calculation

[Boaz Shaanan]

Hi, ProSmart (in 6.3.0) might be your friend here.  Cheers,               Boaz     Boaz Shaanan, Ph.D.                                         Dept. of Life Sciences                                      Ben-Gurion University of the Negev                          Beer-Sheva 84105                                            Israel                                                                                                                  E-mail: bshaa...@bgu.ac.il Phone: 972-8-647-2220  Skype: boaz.shaanan                  Fax:   972-8-647-2992 or 972-8-646-1710                          From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Zhou, Tongqing (NIH/VRC) [E] [tz...@mail.nih.gov] Sent: Sunday, August 05, 2012 5:17 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Pairwise distance calculation Dear All,   I am trying to obtain the pairwise Ca-distances between corresponding residues of two antibody light chains. CCP4 Superpose can output the distances in the log file, but the numbers seem to be wrong when examed by eye. Is there a way to calculate the pairwise distance between two pdb?   Thanks,     Tongqing   Tongqing Zhou, Ph.D. Staff Scientist Structural Biology Section Vaccine Research Center, NIAID/NIH Building 40, Room 4609B 40 Convent Drive, MSC3027 Bethesda, MD 20892 (301) 594-8710 (Tel) (301) 793-0794 (Cell) (301) 480-2658 (Fax) ****************************************************************************** The information in this e-mail and any of its attachments is confidential and may contain sensitive information. It should not be used by anyone who is not the original intended recipient. If you have received this e-mail in error please inform the sender and delete it from your mailbox or any other storage devices. National Institute of Allergy and Infectious Diseases shall not accept liability for any statements made that are sender's own and not expressly made on behalf of the NIAID by one of its representatives. ******************************************************************